View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1327_low_17 (Length: 293)

Name: NF1327_low_17
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1327_low_17
NF1327_low_17
[»] chr2 (10 HSPs)
chr2 (14-262)||(11103956-11104204)
chr2 (157-264)||(11145245-11145352)
chr2 (151-258)||(11095634-11095741)
chr2 (157-264)||(11149179-11149286)
chr2 (152-264)||(11136941-11137053)
chr2 (157-256)||(11110094-11110193)
chr2 (159-264)||(11191962-11192067)
chr2 (157-264)||(11155562-11155669)
chr2 (158-256)||(11118099-11118197)
chr2 (164-260)||(11200121-11200217)
[»] chr4 (1 HSPs)
chr4 (95-132)||(51906708-51906745)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 11103956 - 11104204
Alignment:
Q  14 agactctaagaacaattataatattcgtaaagactgaatttaaataaaaaactatcacggattaaaatcaaaatatactagaaatgtaaggaacaaaatc 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11103956 agactctaagaacaattataatattcgtaaagactaaatttaaataaaaaactatcacgtattaaaataaaaatatactagaaatgtaaggaacaaaatc 11104055  T
Q  114 atatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11104056 atatttaaccctaaaataaagtaaatgaaaagtcttttttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaaca 11104155  T
Q  214 agatgcatttccaaacagaaactcattaagaggtttggatgttgtgaat 262  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||    
T  11104156 agatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaat 11104204  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 11145245 - 11145352
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| ||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11145245 acagggttgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgtt 11145344  T
Q  257 gtgaatca 264  Q
    ||||||||    
T  11145345 gtgaatca 11145352  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 11095634 - 11095741
Alignment:
Q  151 tttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttg 250  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| || || ||||| ||||||||| ||||||||| |||||||||||| ||||||    
T  11095634 tttgtgacagggttgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttg 11095733  T
Q  251 gatgttgt 258  Q
    ||||||||    
T  11095734 gatgttgt 11095741  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 11149179 - 11149286
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11149179 acagggttgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgtt 11149278  T
Q  257 gtgaatca 264  Q
    ||||||||    
T  11149279 gtgaatca 11149286  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 11136941 - 11137053
Alignment:
Q  152 ttgtgacagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttgg 251  Q
    |||| |||||| ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |  |||||  || |||||||||    
T  11136941 ttgtaacagggttgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttgg 11137040  T
Q  252 atgttgtgaatca 264  Q
    |||||||||||||    
T  11137041 atgttgtgaatca 11137053  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 11110094 - 11110193
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| ||||||| ||||||||||||||| ||||| |  || |||||||||||||||||||| |||||||| |  ||||| |||||||| |||||||||    
T  11110094 acagggttgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgtt 11110193  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 11192067 - 11191962
Alignment:
Q  159 agggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgt 258  Q
    |||| ||||||| |||| | ||||||||  || ||||||| || |||||||| ||||  || || ||||| ||||||||| |||||||||||||| ||||    
T  11192067 agggttgtgatgcatcactcttgttgaatgactctgatactatcgtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgt 11191968  T
Q  259 gaatca 264  Q
    ||||||    
T  11191967 gaatca 11191962  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 11155562 - 11155669
Alignment:
Q  157 acagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    |||||| |||||||  || |||||||||||||| |||| ||| || || || |||||| | || |||||||| |  ||||| ||||||||||||||||||    
T  11155562 acagggatgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgtt 11155661  T
Q  257 gtgaatca 264  Q
    || |||||    
T  11155662 gtaaatca 11155669  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 11118099 - 11118197
Alignment:
Q  158 cagggctgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgtt 256  Q
    ||||| ||||||| ||||||||||||||| || |||  ||| |||| |||||||||||||||   |||||| | |||||| |||||| | |||||||||    
T  11118099 cagggttgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgtt 11118197  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 11200121 - 11200217
Alignment:
Q  164 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaagaggtttggatgttgtga 260  Q
    ||||||| ||| |||||| |||||||||| |  ||||| || || |||||| | || |||||||| |  |||||  |||||||||||||||||||||    
T  11200121 tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgtga 11200217  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 51906708 - 51906745
Alignment:
Q  95 aaatgtaaggaacaaaatcatatttaaccctaaaataa 132  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  51906708 aaatgtagggaccaaaatcatatttaaccctaaaataa 51906745  T

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