View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1327_low_23 (Length: 252)
Name: NF1327_low_23
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_23 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 14161133 - 14160907
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14161133 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
14161034 |
T |
|
| Q |
128 |
ttaatggttttttct--cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaag |
225 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14161033 |
ttaatggttttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatgttatcctgaag |
14160934 |
T |
|
| Q |
226 |
atgcaaatggaccacaactcaacaaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14160933 |
atgcaaatggaccacaactcaacaaaa |
14160907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 21424283 - 21424057
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21424283 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
21424184 |
T |
|
| Q |
128 |
ttaatggttttttct--cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaag |
225 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21424183 |
ttaatggttttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatgttatcctgaag |
21424084 |
T |
|
| Q |
226 |
atgcaaatggaccacaactcaacaaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21424083 |
atgcaaatggaccacaactcaacaaaa |
21424057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 29706517 - 29706292
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29706517 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
29706418 |
T |
|
| Q |
128 |
ttaatggttttttct-cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaaga |
226 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
29706417 |
ttaatggtttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacgcttaagaatgttatcctgaaga |
29706318 |
T |
|
| Q |
227 |
tgcaaatggaccacaactcaacaaaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
29706317 |
tgcaaatggaccacaactcaacaaaa |
29706292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University