View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_low_25 (Length: 251)
Name: NF1327_low_25
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 89 - 241
Target Start/End: Complemental strand, 13476612 - 13476464
Alignment:
| Q |
89 |
accttaaatatactatgcattgttcataccaaccgaattaaactcgaagctcaactagcaaaccgtttatatttgaaatatttgaatgtgtaacataagt |
188 |
Q |
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| T |
13476612 |
accttaaatatactatgcattgtccataccagctgagttatactcgaaactca----gcaaaccgtttatatttgaaatatttgaatgtgtaacctaagt |
13476517 |
T |
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| Q |
189 |
cattcataataaatgtgggaatggcccacccaaatcaagatcacatacctttg |
241 |
Q |
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| T |
13476516 |
caatcatagtaaatgtgggcatggcccacccaaatcaagatcacatacctttg |
13476464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13477207 - 13477133
Alignment:
| Q |
1 |
ttgattgcacttaagttatacgactaaatatattttaagaaaatatatggattcaatttgcaactgcaaacacgt |
75 |
Q |
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| T |
13477207 |
ttgattgcacttaattgatatgactaaatatattttaagaaaatatatggattgaatttgtaactgcaaacacgt |
13477133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 685010 - 685050
Alignment:
| Q |
90 |
ccttaaatatactatgcattgttcataccaaccgaattaaa |
130 |
Q |
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| T |
685010 |
ccttacatataatatgcattgttcataccaactgaattaaa |
685050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 50380851 - 50380891
Alignment:
| Q |
89 |
accttaaatatactatgcattgttcataccaaccgaattaa |
129 |
Q |
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| T |
50380851 |
accttacatatattatgcattgttcataccaactgaattaa |
50380891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 32957558 - 32957602
Alignment:
| Q |
89 |
accttaaatatactatgcattgttcataccaaccgaattaaactc |
133 |
Q |
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| T |
32957558 |
accttacatatattatgcattgttcataccaaccgagctaaactc |
32957602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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