View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1327_low_3 (Length: 602)

Name: NF1327_low_3
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1327_low_3
NF1327_low_3
[»] chr4 (36 HSPs)
chr4 (30-602)||(1537428-1538000)
chr4 (124-602)||(1489116-1489594)
chr4 (126-602)||(12121214-12121690)
chr4 (369-566)||(1513407-1513601)
chr4 (387-566)||(1508021-1508200)
chr4 (126-319)||(1504868-1505061)
chr4 (368-562)||(546819-547013)
chr4 (370-564)||(8184031-8184225)
chr4 (358-598)||(1552756-1552999)
chr4 (236-564)||(1524353-1524678)
chr4 (368-549)||(53761771-53761949)
chr4 (89-173)||(1486995-1487082)
chr4 (372-565)||(7225886-7226079)
chr4 (237-488)||(8186959-8187210)
chr4 (371-564)||(7307764-7307957)
chr4 (361-420)||(1519135-1519193)
chr4 (363-565)||(570254-570456)
chr4 (368-421)||(532236-532289)
chr4 (30-77)||(1489001-1489048)
chr4 (368-475)||(1548423-1548530)
chr4 (368-565)||(55505107-55505301)
chr4 (378-428)||(659749-659799)
chr4 (359-420)||(1600467-1600528)
chr4 (443-527)||(3438639-3438723)
chr4 (224-319)||(558647-558742)
chr4 (399-562)||(640821-640984)
chr4 (30-76)||(12121097-12121143)
chr4 (240-312)||(1600575-1600647)
chr4 (513-564)||(558402-558453)
chr4 (501-564)||(1545677-1545740)
chr4 (373-563)||(553384-553574)
chr4 (198-312)||(8183859-8183973)
chr4 (202-271)||(547110-547179)
chr4 (508-565)||(644734-644791)
chr4 (30-75)||(1504754-1504799)
chr4 (370-430)||(12116576-12116636)
[»] chr8 (9 HSPs)
chr8 (159-560)||(18315063-18315464)
chr8 (371-556)||(27922420-27922605)
chr8 (370-564)||(34936164-34936358)
chr8 (217-478)||(32151291-32151549)
chr8 (368-565)||(21235461-21235658)
chr8 (370-413)||(17636402-17636445)
chr8 (373-420)||(28246299-28246346)
chr8 (491-559)||(44736444-44736512)
chr8 (279-319)||(44736626-44736666)
[»] chr3 (5 HSPs)
chr3 (359-562)||(51113771-51113974)
chr3 (359-554)||(13470722-13470917)
chr3 (363-564)||(51120887-51121088)
chr3 (359-545)||(51764430-51764616)
chr3 (373-420)||(1657299-1657346)
[»] chr7 (2 HSPs)
chr7 (289-563)||(15092071-15092345)
chr7 (359-489)||(10614572-10614702)
[»] chr2 (3 HSPs)
chr2 (368-564)||(45245084-45245280)
chr2 (370-420)||(32785773-32785823)
chr2 (161-310)||(32785567-32785716)
[»] chr6 (21 HSPs)
chr6 (359-554)||(6415880-6416075)
chr6 (288-556)||(6402772-6403040)
chr6 (359-545)||(6432084-6432270)
chr6 (369-556)||(7994182-7994369)
chr6 (359-439)||(6589313-6589393)
chr6 (363-419)||(12102315-12102371)
chr6 (371-484)||(6423201-6423314)
chr6 (402-547)||(6585270-6585415)
chr6 (371-556)||(6603204-6603389)
chr6 (373-565)||(11936279-11936471)
chr6 (373-565)||(11948259-11948451)
chr6 (359-478)||(6409996-6410115)
chr6 (366-476)||(6394856-6394966)
chr6 (513-563)||(28934954-28935004)
chr6 (367-419)||(9411404-9411456)
chr6 (359-478)||(6594596-6594715)
chr6 (198-265)||(9411555-9411622)
chr6 (288-341)||(7119284-7119337)
chr6 (288-341)||(7131762-7131815)
chr6 (399-439)||(10579766-10579806)
chr6 (375-439)||(14802365-14802429)
[»] chr1 (5 HSPs)
chr1 (378-564)||(9586543-9586729)
chr1 (194-250)||(9586854-9586910)
chr1 (159-250)||(9581286-9581377)
chr1 (402-563)||(7554393-7554554)
chr1 (378-547)||(9580990-9581161)
[»] chr5 (5 HSPs)
chr5 (376-535)||(41901542-41901701)
chr5 (399-476)||(20478112-20478189)
chr5 (371-520)||(41889556-41889705)
chr5 (376-479)||(37937876-37937979)
chr5 (235-312)||(41901404-41901481)
[»] scaffold0041 (1 HSPs)
scaffold0041 (399-561)||(39091-39253)
[»] scaffold0807 (1 HSPs)
scaffold0807 (371-430)||(1466-1525)


Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 30 - 602
Target Start/End: Original strand, 1537428 - 1538000
Alignment:
Q  30 ttccaaagataccctaacctcacctccctctgcctcactcactactaccgtgacgactcctccctcgcctcttccattagaatgaaatgcacacaaaata 129  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537428 ttccaaagattccctaacctcacctccctctgcctcactcactactaccgtgacgactcctccctcgcctcttccattagaatgaaatgcacacaaaata 1537527  T
Q  130 gtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537528 gtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgc 1537627  T
Q  230 ttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaag 329  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1537628 ttcagttttcccgaatttgcaattgtttaatttgagttattgctttccaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttagg 1537727  T
Q  330 catttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatg 429  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537728 catttgaacttaaccggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatg 1537827  T
Q  430 acaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgct 529  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1537828 acaaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtgct 1537927  T
Q  530 agaaaaatgcacacaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttattgcctca 602  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  1537928 agaaaaatgcactcaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttcttacctca 1538000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 124 - 602
Target Start/End: Original strand, 1489116 - 1489594
Alignment:
Q  124 aaaatagtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaat 223  Q
    |||||||||||||||||||||| || ||  | |||| |||||||||||||||||||||||||||||||| |  | |  || ||||| ||||| |  ||||    
T  1489116 aaaatagtgtagacaattctaattctttcgtcgtcatccctcaattaaagtctctccatttgatttcgaattcacgaatacgagatgaaagcatagaaat 1489215  T
Q  224 gattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgag 323  Q
    ||||||| |  |||||||||||||||||||||||||||||| |||||||| |   |||||||||||||||||||| || ||||||| ||||||||| ||     
T  1489216 gattgctgcccttttccccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattttccatgttttaaagacatgttctgat 1489315  T
Q  324 cttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatg 423  Q
     ||| ||||||||||||||   | |    |||   |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1489316 attaggcatttgaacttaagaagatctttaggaaagaagctgtgcggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatg 1489415  T
Q  424 ttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagta 523  Q
    ||||  || ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| | |||| |  ||||||| |||||||||||||| |    
T  1489416 ttaacaacgaaacactgtgtgtaatctcaatgtgttgccgtgggcttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagca 1489515  T
Q  524 tgtgctagaaaaatgcacacaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttattgcctca 602  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||    
T  1489516 tgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcctca 1489594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 126 - 602
Target Start/End: Original strand, 12121214 - 12121690
Alignment:
Q  126 aatagtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatga 225  Q
    ||||||| |||||||||||| |||||  |||| ||  ||||||||||||||||||||||||||||||||  |||||||  |||| ||||| |||||| ||    
T  12121214 aatagtgcagacaattctaattcctttgttgttagtactcaattaaagtctctccatttgatttcgagtacatggttacaagatgaaagcatcaaaagga 12121313  T
Q  226 ttgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagct 325  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||| |   |||||||||||||||||||| ||||| |||||||||||||||||| |    
T  12121314 ttgcttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttccgagat 12121413  T
Q  326 taagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgtt 425  Q
    || |||||||||||||||  | |    |||  |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121414 tacgcatttgaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgtt 12121513  T
Q  426 aatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatg 525  Q
     ||||  ||||||| |  ||||||||||||||||| | ||||||||||||||||| ||||||| | || | | |||||||| ||| |||||||||| |||    
T  12121514 gatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttgtcacagagatgggagtgaagcatg 12121613  T
Q  526 tgctagaaaaatgcacacaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttattgcctca 602  Q
    || ||||||||||||||||||||||||||||| ||||||||   ||| |||||||| ||  ||||||| ||||||||    
T  12121614 tggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctca 12121690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 369 - 566
Target Start/End: Original strand, 1513407 - 1513601
Alignment:
Q  369 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggc 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  ||||||| |  ||||||||||||||||||| |||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  469 ttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaaa 566  Q
    ||||||||||| ||||| || ||||   | |||||||| ||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  1513507 ttttgcaactcatactgaaaggttg---tattgtcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaa 1513601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 387 - 566
Target Start/End: Original strand, 1508021 - 1508200
Alignment:
Q  387 cccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactgg 486  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||  |||||||||||||||||||||||||||||| |||||||||||||||| | ||||    
T  1508021 cccaaactagaagtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaactcgtgctgg 1508120  T
Q  487 aacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaaa 566  Q
    |  |||||  |   |||||  ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  1508121 atggttgtgctgcagtcaccgagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaa 1508200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 126 - 319
Target Start/End: Original strand, 1504868 - 1505061
Alignment:
Q  126 aatagtgtagacaattctaactccttatttgtcagccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatga 225  Q
    |||||||||||||| ||||| |||||  ||||  ||||||||||||||||||||||||||||||  | || ||| ||| ||||| ||||| || ||| ||    
T  1504868 aatagtgtagacaagtctaattcctttgttgtaggccctcaattaaagtctctccatttgatttttaatccatgtttacgagatgaaagcatccaaacga 1504967  T
Q  226 ttgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttc 319  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||  |   |||||||||||||||||||| || |||||||||||||||||    
T  1504968 ttgcttccgttttccccaatttgcaattggttaattttagttattgccataacatatctgaagaaggtattttccatgttttaaggacatgttc 1505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 368 - 562
Target Start/End: Complemental strand, 547013 - 546819
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    ||||||||||||||||||||| ||| | || ||| |||||||||||  ||||| ||| |||||  ||||||| | ||| ||||||||| |||||  ||||    
T  547013 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T
Q  468 cttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaattt 562  Q
    |||||| || | |||||||||   |||| || ||||||| |||||||||||||  ||||||||||||| |||||| |||||||||||||||||||    
T  546913 cttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaattt 546819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 370 - 564
Target Start/End: Original strand, 8184031 - 8184225
Alignment:
Q  370 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggct 469  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| ||||||  ||| |||| | | |||| | || |||||||||| |||||  ||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  470 tttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    |||| |||| |||||||||  |||| |  |  ||||| |  ||||||||||| ||||||||||||| ||||||||||| | || |||||||||||    
T  8184131 tttggaactgttactggaaaattgtgaaatgatcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttga 8184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 358 - 598
Target Start/End: Original strand, 1552756 - 1552999
Alignment:
Q  358 ggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtg 457  Q
    ||||||| | |||| ||||||||||| |||||||||| ||||||||||| |||||| |||||||| |||||||  |||||||   ||| || ||||||      
T  1552756 ggaagctacttggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaa 1552855  T
Q  458 ttgtcatgggcttttgcaactcttactggaac---gttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagag 554  Q
    ||||| |||||||||||| || ||||| ||||   ||  ||||  ||||||  |||||||||||||| ||||   |||||| |||   ||||||||||||    
T  1552856 ttgtcgtgggcttttgcagctgttactagaacaatgtaattattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagag 1552955  T
Q  555 atcaatttgaaaaggtgtgttcaagtggatgatgatgttattgc 598  Q
    |||||||||||| | ||| || |||||||| |||||||| ||||    
T  1552956 atcaatttgaaaggttgtcttaaagtggatcatgatgttgttgc 1552999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 236 - 564
Target Start/End: Original strand, 1524353 - 1524678
Alignment:
Q  236 tttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttg 335  Q
    |||||||||||||||  ||||| |||| ||||||||||  |   ||||||||||||||||| |||| |||||||||| |||||   | |||| |||||||    
T  1524353 tttccccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 1524452  T
Q  336 aactta----actggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgac 431  Q
    ||||||    ||||   ||| |   | ||| || ||||||||||||||||||||||||||  | || |||||||| ||||||  ||||| |||| ||||     
T  1524453 aacttagccaactgttctaaaa---tagaa-cttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgat 1524548  T
Q  432 aaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctag 531  Q
     ||||||| | | | |||||| || |||||| ||||||||||||||| ||| ||   ||| ||| |  ||||||| ||| ||||||||| |||||| |||    
T  1524549 gaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgttattg---cgtagttgttatgtcacagagaggggagtgaattatgtgatag 1524645  T
Q  532 aaaaatgcacacaactaagagagatcaatttga 564  Q
    |||| ||||||||||| |||||||| |||||||    
T  1524646 aaaactgcacacaactgagagagattaatttga 1524678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 549
Target Start/End: Original strand, 53761771 - 53761949
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    |||||||||||||| ||||||||| ||||| | |||||||||||||| ||| || ||||| || |||||||| ||||  ||||| |||  ||||| ||||    
T  53761771 tggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactctgtg--atctcgaagaattgtcgtggg 53761868  T
Q  468 cttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaa 549  Q
    ||||||||| | |||||| ||| |||| ||  ||||||  | |||||||||||  |||||  |||||| |||||||||||||    
T  53761869 cttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcacacaactaa 53761949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 1486995 - 1487082
Alignment:
Q  89 ctccctcgcctcttccattagaatgaaatgcacacaa---aatagtgtagacaattctaactccttatttgtcagccctcaattaaag 173  Q
    ||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||| || ||  |||| |||||||||||||||    
T  1486995 ctcccacgcctcttccattagaatgaaatgcacacaaaataatagtgtagacaattctaattcatttgttgtaagccctcaattaaag 1487082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 565
Target Start/End: Original strand, 7225886 - 7226079
Alignment:
Q  372 atgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttt 471  Q
    |||||||||||||||| | || | || || |||||||||||| ||||||  ||| ||||||||  |||  |||| || |||||| |||||  ||| ||||    
T  7225886 atgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttt 7225985  T
Q  472 tgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    ||||||| ||||||||| |||||| |   |||||  |||||||| ||||| | ||| ||||||| ||||  ||||| |||||||||||||||||    
T  7225986 tgcaactattactggaaagttgttttgaggtcaccgagaagggattgaagcacgtggtagaaaactgcaagcaactgagagagatcaatttgaa 7226079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 237 - 488
Target Start/End: Original strand, 8186959 - 8187210
Alignment:
Q  237 ttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttga 336  Q
    |||||||||||||| |||||| |||||||| |||||| |   ||||||||||||||||||| ||||||||| | || |||||  ||| ||| | ||||||    
T  8186959 ttccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttga 8187058  T
Q  337 actta----actggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgaca 432  Q
    |||||    |||| |  ||||| ||||   || |  ||||||||||||||| || ||||||| || ||||||||||||||| ||||||  ||| |||| |    
T  8187059 acttagcctactgtcc-aagag-ttgggctctcc--ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgata 8187154  T
Q  433 aaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaa 488  Q
    ||||||| | || ||| |||||| |||||  ||||||||||||  | |||||||||    
T  8187155 aaacactttatgcaatttcaaagagttgttgtgggcttttgcagttgttactggaa 8187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 371 - 564
Target Start/End: Complemental strand, 7307957 - 7307764
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctt 470  Q
    |||||||||| ||||||||||| | || || |||||||||||||||||| | ||| ||||  || ||||  || | ||||||||| |||||  | |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  471 ttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    ||||| || ||||||||| |||||| | |||||||   ||  ||| ||||| ||||| ||||||| ||||| ||||| || || ||||||||||    
T  7307857 ttgcacctgttactggaaggttgttttattgtcacgatgactggattgaagcatgtggtagaaaactgcacgcaactgagggaaatcaatttga 7307764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 361 - 420
Target Start/End: Original strand, 1519135 - 1519193
Alignment:
Q  361 agctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 420  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  1519135 agctgcatg-aatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaa 1519193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 363 - 565
Target Start/End: Complemental strand, 570456 - 570254
Alignment:
Q  363 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtc 462  Q
    |||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||   ||| || || ||  ||| | | | || |||||| ||||||    
T  570456 ctgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtc 570357  T
Q  463 atgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaattt 562  Q
      |||||||||||||| ||||| || | |||||||  ||| ||  | |  || |||||  ||||| ||||||| ||||||||||| || |||||||||||    
T  570356 gcgggcttttgcaactgttacttgagcattgttattatgttactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaattt 570257  T
Q  563 gaa 565  Q
    |||    
T  570256 gaa 570254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 532289 - 532236
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 421  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  532289 tggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaa 532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1489001 - 1489048
Alignment:
Q  30 ttccaaagataccctaacctcacctccctctgcctcactcactactac 77  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  1489001 ttccaaagattccctaacctcacctccatctgcctcactcactactac 1489048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 1548423 - 1548530
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    |||| ||||||||||| |||||||||| || ||||||||||||||| |||||| | || ||||  |||||||   ||| ||||||||| |||||  ||||    
T  1548423 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T
Q  468 cttttgca 475  Q
    ||||||||    
T  1548523 cttttgca 1548530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 565
Target Start/End: Original strand, 55505107 - 55505301
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    |||||||||||||  ||| ||| ||||||| ||||||||||||||||||||||| ||| | ||   |||||| | ||| | |||||||  ||||| |||     
T  55505107 tggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtgacctcaaagaattgtcgtgga 55505206  T
Q  468 cttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    ||||||||  | ||| || ||  | |  ||   |||||| |||||||||||||  | ||| ||||||| ||||||||||||||||||||||| |||||    
T  55505207 cttttgcatttgttattgaaaaatagcgat---gtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaa 55505301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 659799 - 659749
Alignment:
Q  378 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaat 428  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacatacaagtgttaat 659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 1600528 - 1600467
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 420  Q
    ||||||||  |||||||||||||||||||  ||||| || ||||||||||||||||||||||    
T  1600528 gaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaa 1600467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 527
Target Start/End: Original strand, 3438639 - 3438723
Alignment:
Q  443 tgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtg 527  Q
    ||||||||||||| |||||  ||||||||||||||| |||||||||  |||| |   |||||||  |||||||||||||||||||    
T  3438639 tgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtg 3438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 558742 - 558647
Alignment:
Q  224 gattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttc 319  Q
    ||||||||| |||||||| |||||| |||||||| ||||||  |||||   |  |||||| ||| ||||||||| ||| |||||||||||||||||    
T  558742 gattgcttccgttttcccgaatttgaaattgcttgatttgatctattgtcataaaatatcagaaaaaggtatttgtcatgttttaaggacatgttc 558647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 562
Target Start/End: Complemental strand, 640984 - 640821
Alignment:
Q  399 gtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatc 498  Q
    ||||||||||||||| ||||||| ||| ||||  ||||||| |  || | |||||||  ||| | ||| |||||||| || |||||||||  |||| ||     
T  640984 gtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcatt 640885  T
Q  499 ttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaattt 562  Q
     ||| ||| |||||||||||||  ||||| ||||||| |||| | || |||||||| |||||||    
T  640884 atgtaacaaagaagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaattt 640821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 12121097 - 12121143
Alignment:
Q  30 ttccaaagataccctaacctcacctccctctgcctcactcactacta 76  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  12121097 ttccaaagattccctaacctcacctctctccgcctcactcactacta 12121143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 1600647 - 1600575
Alignment:
Q  240 cccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaagga 312  Q
    |||||||||||| ||||| |||||||   |||| ||   ||||||||||||||||||| ||||||||||||||    
T  1600647 cccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaagga 1600575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 513 - 564
Target Start/End: Complemental strand, 558453 - 558402
Alignment:
Q  513 ggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    ||||||||| ||||||||||||| ||||||||| | ||||| ||||||||||    
T  558453 ggagtgaagcatgtgctagaaaactgcacacaaatgagagaaatcaatttga 558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 564
Target Start/End: Complemental strand, 1545740 - 1545677
Alignment:
Q  501 gtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    |||||| |||||||||||||  ||| | || |||| |||||||||||||||| |||||||||||    
T  1545740 gtcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttga 1545677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 563
Target Start/End: Complemental strand, 553574 - 553384
Alignment:
Q  373 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctttt 472  Q
    |||||||| |||||| |||||| || |||||||||||||||| |||||  ||| ||||  || ||||   ||| || |||||| |||||  |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  473 gcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttg 563  Q
    |||||| ||  ||     ||||  |  ||||||| | || ||||||||  ||||| ||||||| ||||||||||| ||||||||| |||||    
T  553474 gcaactgttgttgttttattgtagtgatgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 8183859 - 8183973
Alignment:
Q  198 tggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtattt 297  Q
    ||||||| |||||||| | ||||||   ||||||| || ||||||||||||||   |||| |||||||| ||||||||   || |||||| ||||||||     
T  8183859 tggttaacagataaaaacgtcaaaaaatttgcttccgtgttccccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtatta 8183958  T
Q  298 ttcaagttttaagga 312  Q
     |||| |||||||||    
T  8183959 ctcaaattttaagga 8183973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 547179 - 547110
Alignment:
Q  202 taagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattg 271  Q
    |||||||| ||||| |||||||| || ||||  | ||||||||||||||| ||||| |||| ||||||||    
T  547179 taagagatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatttaagttattg 547110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 644791 - 644734
Alignment:
Q  508 agaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    |||| ||||||||  ||||| | ||||||||||||||||| ||||||||| |||||||    
T  644791 agaaaggagtgaaacatgtggttgaaaaatgcacacaactgagagagatcgatttgaa 644734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 1504754 - 1504799
Alignment:
Q  30 ttccaaagataccctaacctcacctccctctgcctcactcactact 75  Q
    |||||||||| ||||||||||||||||||| ||||  |||||||||    
T  1504754 ttccaaagattccctaacctcacctccctccgccttgctcactact 1504799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 12116576 - 12116636
Alignment:
Q  370 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 430  Q
    ||||||||||||| ||||| ||  |||| ||||||||||||||| |||||| |||| ||||    
T  12116576 gaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatga 12116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 159 - 560
Target Start/End: Original strand, 18315063 - 18315464
Alignment:
Q  159 agccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgctta 258  Q
    |||||||||||||||||||||| ||| | ||  | |  ||||||||||||  ||||| |||||||  || ||||  |||||||||||||||| ||||||     
T  18315063 agccctcaattaaagtctctccgttttacttgcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttg 18315162  T
Q  259 atttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttg 358  Q
    ||||||| || |||  |   ||| ||||||||||||||| |||||||||| | |  ||||| ||| |||  || ||||||||| || |      | |       
T  18315163 atttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgagattagacagttgaacttagctcgtgattcaagaat 18315262  T
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| | ||||||||||||| ||||||||||||| || ||||||||||||||| ||||||| ||| ||||  || |||| | ||| ||||||||| ||    
T  18315263 gaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagt 18315362  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatca 558  Q
    |||| | ||||||||||||| ||| ||||||| |||| |  ||||||| |||| ||||  ||||||||| ||||||| ||||||||||| | |||| |||    
T  18315363 tgtcgtaggcttttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaactgatagagctca 18315462  T
Q  559 at 560  Q
    ||    
T  18315463 at 18315464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 371 - 556
Target Start/End: Complemental strand, 27922605 - 27922420
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctt 470  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||| ||||  || |||| | | | ||||||||| |||||  |||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  471 ttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagat 556  Q
    ||| || | | ||| |||  |||| ||  | ||||| |||||||||||||  ||||| ||||||| ||||| ||||| ||| ||||    
T  27922505 ttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgagaaagat 27922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 370 - 564
Target Start/End: Original strand, 34936164 - 34936358
Alignment:
Q  370 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggct 469  Q
    |||||| |||||| ||||| |||||||| |||||| |||||||||||||||  ||| |||| |||||||| | ||  ||| ||||| |||||| ||||||    
T  34936164 gaatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggct 34936263  T
Q  470 tttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    ||||||||| |||||  ||  ||||| |  ||||||  ||||||||||  ||  |||| | ||||| ||||||||| | || |||||||||||||    
T  34936264 tttgcaactattacttcaaaattgttgtgatgtcacggagaagggagttgagcgtgtggttgaaaattgcacacaattgagggagatcaatttga 34936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 217 - 478
Target Start/End: Complemental strand, 32151549 - 32151291
Alignment:
Q  217 tcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaaggacatg 316  Q
    |||||||| |||||||  ||||||| ||||||||| ||||| ||||||| | ||||  |   |||||||||||||| |||| ||||||||||||   |||    
T  32151549 tcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgaggtgttgccataacatatctgaagaaggaatttgtcaagttttaag---atg 32151453  T
Q  317 ttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatat 416  Q
     || ||| ||| ||||||||| || || ||||    |  |  |||||||| |||||||||||| |||||| |||| || || ||||| |||||||||| |    
T  32151452 ctctgagattaggcatttgaatttcaccggctgtttacatgtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgt 32151353  T
Q  417 acaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaact 478  Q
    ||||   || ||||  ||||||| | ||| ||||||||| |||||  |||||||||||||||    
T  32151352 acaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaact 32151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 565
Target Start/End: Complemental strand, 21235658 - 21235461
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||   ||| || || ||  ||| | | | || |||||| | ||||   ||    
T  21235658 tggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtcgcagg 21235559  T
Q  468 cttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    ||||||||||| ||||| || | |||||||  ||||||  | |  || |||||  ||||| ||||||| ||||||||||| || ||||||||||||||    
T  21235558 cttttgcaactgttacttgagcattgttattatgtcactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaa 21235461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 17636402 - 17636445
Alignment:
Q  370 gaatgaactttgaagttcccaaactagaagtgttgaacttgtca 413  Q
    ||||||||||||||||||||||| | || |||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtca 17636445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 28246299 - 28246346
Alignment:
Q  373 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 420  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 28246346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 559
Target Start/End: Complemental strand, 44736512 - 44736444
Alignment:
Q  491 ttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaa 559  Q
    |||||||  |||||||  ||||||||||||  ||||  ||||||| || ||||||||||||||||||||    
T  44736512 ttgttataatgtcacaacgaagggagtgaaacatgttgtagaaaattgtacacaactaagagagatcaa 44736444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 44736666 - 44736626
Alignment:
Q  279 atatctgaagaaggtatttttcaagttttaaggacatgttc 319  Q
    |||| |||||||||||||| ||| |||||||||||||||||    
T  44736666 atatttgaagaaggtatttctcatgttttaaggacatgttc 44736626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 359 - 562
Target Start/End: Original strand, 51113771 - 51113974
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| | ||||||||||||||||| ||||||||| || |||||  |||||||| ||||||  ||| ||||  ||||||| | ||| ||||| ||| ||    
T  51113771 gaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagt 51113870  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatca 558  Q
    |||  ||||||||||||||| |||||| ||  |||||| | ||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||| |    
T  51113871 tgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagatta 51113970  T
Q  559 attt 562  Q
    ||||    
T  51113971 attt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 359 - 554
Target Start/End: Original strand, 13470722 - 13470917
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| | ||||||||||||||  |||||||| || || ||||||||||||||| ||||||| |||||||| |||||||| | | | |||||||||  |    
T  13470722 gaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaat 13470821  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagag 554  Q
    |||  ||||||||||||||| ||||| |||| |||| ||  ||||||| |  ||||||||||  ||||| |||| || |||||||| |||||||||    
T  13470822 tgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcacacagctaagagag 13470917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 564
Target Start/End: Original strand, 51120887 - 51121088
Alignment:
Q  363 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtc 462  Q
    ||||||||||||||||||||||||| |||| | || ||||||||||||||  ||||||  ||| ||||  ||| ||| | ||||||||||||| ||||||    
T  51120887 ctgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtc 51120986  T
Q  463 atgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaattt 562  Q
     ||||||||||||| | |  || ||| | ||||    ||||||||| || ||||||||  ||||| ||||||| ||||||||| | |||| |||||| ||    
T  51120987 gtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtagaaaactgcacacaattgagagtgatcaactt 51121086  T
Q  563 ga 564  Q
    ||    
T  51121087 ga 51121088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 359 - 545
Target Start/End: Original strand, 51764430 - 51764616
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| | |||||||||||||| |||||| || || || |||||  ||||||||| |||||| ||| |||| |||||||| | ||  |||||||||  |    
T  51764430 gaagctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaat 51764529  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaa 545  Q
    |||   |||||||||||||| |||||||||| |||| ||  |||||   |||||||||||||  ||||| | ||||| |||||||||    
T  51764530 tgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaa 51764616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 1657346 - 1657299
Alignment:
Q  373 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 420  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 1657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 289 - 563
Target Start/End: Original strand, 15092071 - 15092345
Alignment:
Q  289 aaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttcc 388  Q
    ||||||||| |||||||||||||| |||||   ||||||| ||||||||||||||||| |    | ||  ||| || |||||||||||||||| ||||||    
T  15092071 aaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcc 15092170  T
Q  389 caaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaa 488  Q
    | | || || |||||||| |||||| | ||||| |||||||| |||||||| | ||  |||||||||  ||||  ||||||||||||||| ||||| |||    
T  15092171 cgagctggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaa 15092270  T
Q  489 cgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttg 563  Q
      |||||||  ||||||| |   |||||||||  ||||||||||||| ||||||||| | |||||||| ||||||    
T  15092271 ttttgttataatgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttg 15092345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 489
Target Start/End: Complemental strand, 10614702 - 10614572
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| | |||||||||| |||  |||||||| || || ||||||||||||||| |||| || |||||||| |||||||| | ||| ||||| |||       
T  10614702 gaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaac 10614603  T
Q  459 tgtcatgggcttttgcaactcttactggaac 489  Q
    |||  ||||||||||||||| ||||| ||||    
T  10614602 tgtagtgggcttttgcaactattacttgaac 10614572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 368 - 564
Target Start/End: Original strand, 45245084 - 45245280
Alignment:
Q  368 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatggg 467  Q
    |||||| |||||||||||||| ||||| || |||||||| |||||| | ||||  ||| ||||  |||||||   ||| ||||||||| |||||| ||||    
T  45245084 tggaataaactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T
Q  468 cttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    ||||||||||| ||| || ||   ||||||| ||||||| | |||||||||||  ||||| ||||||| ||||||||||| | ||||||||||||||    
T  45245184 cttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttga 45245280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 32785773 - 32785823
Alignment:
Q  370 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 420  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||| ||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaa 32785823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 310
Target Start/End: Original strand, 32785567 - 32785716
Alignment:
Q  161 ccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaat 260  Q
    |||||||||||||| ||||||||||  |   | | | |||||||||||| ||||| |||  ||| || ||||  ||||  ||||||||||| | ||| ||    
T  32785567 ccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgat 32785666  T
Q  261 ttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaag 310  Q
    ||||| ||||||| |   ||||||||||||||||||| |||| |||||||    
T  32785667 ttgagctattgctataacatatctgaagaaggtatttgtcaatttttaag 32785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 359 - 554
Target Start/End: Complemental strand, 6416075 - 6415880
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| ||||||||| |||||| ||||||||| || || ||||||||||||||| ||||||| |||||||| ||||| || | ||| |||||||||  |    
T  6416075 gaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaat 6415976  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagag 554  Q
    |||   |||||||||||||| ||||| |||  |||| ||  ||||||| |   |||||||||  ||||| |||| || ||||||||||||||||||    
T  6415975 tgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 556
Target Start/End: Complemental strand, 6403040 - 6402772
Alignment:
Q  288 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaacttaactggcttaagaggttggaagctgcatggaatgaactttgaagttc 387  Q
    |||||||||| |||||||||||||| |||||   |  ||| |||||||||||||||||| |    | |   |||||| | |||||| ||||||| |||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttc 6402941  T
Q  388 ccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactgga 487  Q
    || ||||||||||||||||||||||| |||| || ||| ||||  ||||||| | ||| |||||||||  ||||  |||||||||| |||| ||| ||      
T  6402940 cccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgag 6402841  T
Q  488 acgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagat 556  Q
    |  |||||||  ||||||| | ||||||| |||  ||||| ||||||| || |||||||| ||||||||    
T  6402840 agattgttataatgtcacagaaaagggagcgaaacatgtgatagaaaactgtacacaactgagagagat 6402772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 359 - 545
Target Start/End: Complemental strand, 6432270 - 6432084
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| |||||||||||||||||||||||||| ||  | ||||||||||||||| ||||||  ||| ||||  ||||||| | ||| |||| ||||  |    
T  6432270 gaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaat 6432171  T
Q  459 tgtcatgggcttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaa 545  Q
    |||  ||||||| ||||||| || ||| |   |||| ||  |||||||||||||||||||||   |||| |||||||||||||||||    
T  6432170 tgttgtgggcttctgcaactattcctgtacaattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacacaa 6432084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 369 - 556
Target Start/End: Original strand, 7994182 - 7994369
Alignment:
Q  369 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggc 468  Q
    ||||||||||||| |||||| || ||||| ||||||||| ||||| ||||||  ||||||||| ||||||| | ||| |||||||||  ||||  ||| |    
T  7994182 ggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggac 7994281  T
Q  469 ttttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagat 556  Q
    |||||||||| ||||| |||| |||| ||  ||| ||  || ||||||||||  ||||| ||||||| ||||| ||||| | ||||||    
T  7994282 ttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggtagaaaactgcacgcaactgaaagagat 7994369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 439
Target Start/End: Original strand, 6589313 - 6589393
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacact 439  Q
    |||||| | |||||||||||||| ||||||||  || || ||||||||||||||| |||||||||||||||| ||||||||    
T  6589313 gaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacact 6589393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 12102371 - 12102315
Alignment:
Q  363 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 419  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||    
T  12102371 ctgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 484
Target Start/End: Complemental strand, 6423314 - 6423201
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctt 470  Q
    |||||||||| |||||||||| || || ||||||||||||||| ||||||  ||||  || |||||||| | ||  ||||||||| |||||  |||| ||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggatt 6423215  T
Q  471 ttgcaactcttact 484  Q
    |||||||| |||||    
T  6423214 ttgcaactattact 6423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 547
Target Start/End: Original strand, 6585270 - 6585415
Alignment:
Q  402 ttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttg 501  Q
    |||||||||||| ||||||| ||| ||||  ||||||| | ||| ||||||||| |||||  || ||||||| |||| |||||| || ||||| |   ||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  502 tcacacagaagggagtgaagtatgtgctagaaaaatgcacacaact 547  Q
    ||||| |||||||| ||||  ||||| ||||||  |||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaatttgcacacaact 6585415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 556
Target Start/End: Original strand, 6603204 - 6603389
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctt 470  Q
    ||||||||||| | ||||||| ||| | |||||| ||||| || |||||  |||| ||||  ||||| | | ||  ||||||||| |||||| |||||||    
T  6603204 aatgaactttgtacttcccaagctacaggtgttggacttggcagatacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggctt 6603303  T
Q  471 ttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagat 556  Q
    ||| |||| ||| || ||  |||||||  ||||||| |||| ||||||||  ||||| ||||||| |||| |||||| ||| ||||    
T  6603304 ttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaactgagaaagat 6603389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 565
Target Start/End: Original strand, 11936279 - 11936471
Alignment:
Q  373 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctttt 472  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||  ||| | || ||| |||| | |   ||||||||| |||||  |||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  473 gcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    |||||| | |||  ||  |||| |   ||||||| | || ||||||| | ||||| | ||||||||||||||| | |||||| || |||||||    
T  11936379 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaa 11936471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 565
Target Start/End: Original strand, 11948259 - 11948451
Alignment:
Q  373 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctttt 472  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||  ||| | || ||| |||| | |   ||||||||| |||||  |||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  473 gcaactcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttgaa 565  Q
    |||||| | |||  ||  |||| |   ||||||| | || ||||||| | ||||| | ||||||||||||||| | |||||| || |||||||    
T  11948359 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgagagaggtcgatttgaa 11948451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 478
Target Start/End: Complemental strand, 6410115 - 6409996
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| |||||||||||||||||||||||||| ||  | |||||||||| |||| ||||||  ||| ||||  |||| || | ||| |||||||||  |    
T  6410115 gaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaat 6410016  T
Q  459 tgtcatgggcttttgcaact 478  Q
    |||  | |||||||||||||    
T  6410015 tgttgtcggcttttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 6394966 - 6394856
Alignment:
Q  366 catggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatg 465  Q
    |||||||||||||||| ||||||| | || || ||||||||||||||| ||||||  ||| ||||  |||| || | ||| |||||||||  ||||  ||    
T  6394966 catggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtg 6394867  T
Q  466 ggcttttgcaa 476  Q
    |||||||||||    
T  6394866 ggcttttgcaa 6394856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 563
Target Start/End: Complemental strand, 28935004 - 28934954
Alignment:
Q  513 ggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttg 563  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||| |||||    
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 9411456 - 9411404
Alignment:
Q  367 atggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 419  Q
    ||||| |||||||||| |||||||| || || |||||||||||||||||||||    
T  9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 478
Target Start/End: Original strand, 6594596 - 6594715
Alignment:
Q  359 gaagctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgt 458  Q
    |||||| |||||||| ||||||  |||||||||||| || |||||| |||||||| ||||| | ||| ||||  | |||||  |||| |||||||||  |    
T  6594596 gaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaat 6594695  T
Q  459 tgtcatgggcttttgcaact 478  Q
    |||  ||||||||| |||||    
T  6594696 tgttgtgggcttttacaact 6594715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 9411622 - 9411555
Alignment:
Q  198 tggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgcaattgcttaatttgag 265  Q
    |||||||||||||||| | |||||| | |||||||  ||||||||||||||||  ||||| |||||||    
T  9411622 tggttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 9411555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 7119337 - 7119284
Alignment:
Q  288 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaactta 341  Q
    |||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaactta 7119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 7131815 - 7131762
Alignment:
Q  288 gaaggtatttttcaagttttaaggacatgttccgagcttaagcatttgaactta 341  Q
    |||||||||| |||||||||||||| ||||||  || |||| ||||||||||||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaactta 7131762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 10579766 - 10579806
Alignment:
Q  399 gtgttgaacttgtcatatacaaatgttaatgacaaaacact 439  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  10579766 gtgttgaacttgtcatatacaaaagttgatgataaaacact 10579806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 14802429 - 14802365
Alignment:
Q  375 aactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacact 439  Q
    |||||||||||||||||  | ||||||||||| |||||| ||||||| ||| ||||  |||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacact 14802365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 564
Target Start/End: Complemental strand, 9586729 - 9586543
Alignment:
Q  378 tttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaac 477  Q
    |||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||  ||||||| | ||| | ||||| |  ||||| ||| |||||||| |    
T  9586729 tttgaagtccccaagctagaggtgttgaacttgtcatatacagatgttaatgatgaaacactttatgtgacctcaatgaattgtcgtggacttttgcatc 9586630  T
Q  478 tcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttga 564  Q
    | |||| | ||  |||||||| |||||||   || ||| |||||  |||| ||||||| |||||||| |||| ||| ||| ||||||    
T  9586629 ttttacagaaaaattgttatcatgtcacaagcaatggattgaagcgtgtggtagaaaattgcacacatctaaaagaaatcgatttga 9586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 9586910 - 9586854
Alignment:
Q  194 tcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgca 250  Q
    |||||||||||||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  9586910 tcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9586854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 9581377 - 9581286
Alignment:
Q  159 agccctcaattaaagtctctccatttgatttcgagtcaatggttaagagataaaagcttcaaaatgattgcttcagttttccccaatttgca 250  Q
    ||||||||||||||||||||  |||||  |   | |||||| ||||||||||||| | ||| |||| |||||||| ||||||||||||||||    
T  9581377 agccctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgca 9581286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 563
Target Start/End: Complemental strand, 7554554 - 7554393
Alignment:
Q  402 ttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatcttg 501  Q
    |||||||| |||||||||| |||| ||||  || |||| | | | ||||||||| |||||  ||| ||||| ||||| |||||| || | ||| ||  ||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  502 tcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatttg 563  Q
    ||||| | |||||||||||| ||||| ||||||| ||||| | ||| | |||||| ||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 7554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 547
Target Start/End: Complemental strand, 9581161 - 9580990
Alignment:
Q  378 tttgaagttcccaaactagaagtgttgaacttgtcatatac--aaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgca 475  Q
    |||||| | ||||| ||||| |||||||||||||||| |||  ||| ||||||||  |||| || | ||| |||||||||  ||||| ||| ||||||      
T  9581161 tttgaactccccaagctagaggtgttgaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaaagaattgtcgtggacttttgtg 9581062  T
Q  476 actcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaact 547  Q
     || |||||| ||  | |||||  ||||||| | || |||||||||  |||| ||||||| |||||||||||    
T  9581061 ccttttactgaaagatagttatggtgtcacaaacaatggagtgaagcgtgtggtagaaaattgcacacaact 9580990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 535
Target Start/End: Original strand, 41901542 - 41901701
Alignment:
Q  376 actttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgca 475  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||  || |||| | | | ||||||||| |||||  ||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  476 actcttactggaacgttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaa 535  Q
    | | | |||  ||  |||| ||  ||||||| |||||||||||||| ||||| |||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaa 41901701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 20478112 - 20478189
Alignment:
Q  399 gtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaa 476  Q
    ||||||||||||||||||||||||||| ||||| ||||| | | ||| ||||||| |  ||||  |||||||||||||    
T  20478112 gtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaa 20478189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 520
Target Start/End: Original strand, 41889556 - 41889705
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggctt 470  Q
    |||||||||| ||||||||||| | || ||||||||||| ||||||||||| ||| ||||  ||||||| | |   ||||||||| |||||   ||||||    
T  41889556 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctt 41889655  T
Q  471 ttgcaactcttactggaacgttgttatcttgtcacacagaagggagtgaa 520  Q
    | | || | |||||  ||  |||||||  ||||||| |||||||||||||    
T  41889656 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaa 41889705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 37937979 - 37937876
Alignment:
Q  376 actttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgca 475  Q
    |||||||||||||||| || || |||||| ||||| || ||||||   || ||||  ||||||| | |||||||||||||   |||| ||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T
Q  476 actc 479  Q
    ||||    
T  37937879 actc 37937876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 41901404 - 41901481
Alignment:
Q  235 ttttccccaatttgcaattgcttaatttgagttattgcttttcaatatctgaagaaggtatttttcaagttttaagga 312  Q
    ||||||||||||||||  ||||| |||||||  |||| | |   |||| ||||||||||||| |||||||||||||||    
T  41901404 ttttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaagga 41901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 561
Target Start/End: Complemental strand, 39253 - 39091
Alignment:
Q  399 gtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcatgggcttttgcaactcttactggaacgttgttatc 498  Q
    |||||||||||| ||| |||||| ||||||||  ||||||| | ||| ||||||||| |||||  |||||||||||| ||  ||||||||   |||| ||    
T  39253 gtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaaaatgttctc 39154  T
Q  499 ttgtcacacagaagggagtgaagtatgtgctagaaaaatgcacacaactaagagagatcaatt 561  Q
     |||||||  ||||||||||||  ||||| || | || ||||| ||||| |||||||| ||||    
T  39153 gtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaactgagagagattaatt 39091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 1466 - 1525
Alignment:
Q  371 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatga 430  Q
    ||||||||||| |||||| || ||||| |||||| |||||||| ||||||||||| ||||    
T  1466 aatgaactttgtagttcctaagctagaggtgttggacttgtcaaatacaaatgttgatga 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University