View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_low_5 (Length: 515)
Name: NF1327_low_5
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 37919665 - 37919183
Alignment:
| Q |
15 |
ttcgacaaggttgcagcgtgcgagcgaaaagtggaggaggagagcagaattcaaacacaaatctatgcaatatgaaattgaaatacagtatggttgtggt |
114 |
Q |
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| T |
37919665 |
ttcggcaaggttgcatggtgcgagcgaaaagtagaggaggagagcagaattctaacacaaatctatgcaatatgaaattgaaatacagtatggttgtggt |
37919566 |
T |
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| Q |
115 |
ggttgtcacaatcggtatgtagaaattatcaacaggatgtagcctagatttaaaccacagtacaatgttaattccggtaaatggaagtccaacatcgaaa |
214 |
Q |
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| T |
37919565 |
ggttgtcacaatcggtatgtagaaattatcaacaggatgtagcctagatttaaaccacagtacaatgttaattccggtaaatggaagtccaacatcgaaa |
37919466 |
T |
|
| Q |
215 |
ttcatagtaggcaaatgattgagataaggatatcctctcagtcccattcctataattgcggtggaaggattaacaaatttgtttcaaaaggtggtagaaa |
314 |
Q |
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| T |
37919465 |
ttcatagtaggcaaatgattgagataaggatatcctctcagtcccattcctataattgcggtggaaggattaacaaatttgtttcaaaaggtggtagaaa |
37919366 |
T |
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| Q |
315 |
tggaaaattttgaaattggctcaagatttgatgatgaagcttctggatccaacgattaactcaactgatttctctgtttcattttgtcaaaaatcgcgat |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37919365 |
tggaaaatattgaaattggctcaagatttgatgatgaagcttctggatccaacgattaactcaactgatttctctgtttcattttgtcaaaaatcgcgat |
37919266 |
T |
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| Q |
415 |
acagtgcagcttgaaatagtataatgcacgaaagtgaatcacacacgatcatagaaaattgtggagtgattttctcggggtat |
497 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37919265 |
acagtgcagcttgaaatagtataatgtacgaaagtgaatcacacacgatcatagaaaattgtggagtgattttctcggggtat |
37919183 |
T |
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