View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_low_6 (Length: 485)
Name: NF1327_low_6
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 11164574 - 11164365
Alignment:
| Q |
7 |
tgaacccaccagagacttcttcggtcggcctctactgcgtcgtggcgcctcaatgctcccgcccccattcgagtttctcttcaaacctttgctgctgcca |
106 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164574 |
tgaacccaccagcgacttcttcggtcggcctctacagcgtcgtggcgcctcaatgctcccgcccccattcgagtttctcttcaaacctttgctgctgcca |
11164475 |
T |
|
| Q |
107 |
ccattattattaaccaccttattatcgtcaaacaccatcatatcaaaagtttcaatcccaggtttgttatcaacatcaacaacttcagtttccatcatcg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164474 |
ccattattattaaccaccttattatcgtcaaacaccatcatatcaaaagtttcaatcccaggtttgttatcaacatcaacaacttcagtttccatcatcg |
11164375 |
T |
|
| Q |
207 |
aagccacact |
216 |
Q |
| |
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|||||||||| |
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| T |
11164374 |
aagccacact |
11164365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11157622 - 11157423
Alignment:
| Q |
20 |
gacttcttcggtcggcctctactgcgtcgtggcgcctcaatgctcccgcccccattcgagtttctcttcaaacctttgctgctgccaccattattattaa |
119 |
Q |
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|||||||||||||||||||||| || || || |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11157622 |
gacttcttcggtcggcctctaccacgccgcggagcctcaatgccgccgcccccattccagtttctcttcaaacctttgttgctgccaccattattattaa |
11157523 |
T |
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| Q |
120 |
ccaccttattatcgtcaaacaccatcatatcaaaagtttcaatcccaggt---ttgttatcaacatcaacaacttcagtttccatcatcgaagccacact |
216 |
Q |
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| T |
11157522 |
ccaccttattatcatcaaacaccatcatttcaaaattttcaatcgcaggtttgttgttatcaatatcaacaacatcagtttccatcatcgaatccacact |
11157423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 11177061 - 11176942
Alignment:
| Q |
323 |
cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatccccattttttaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177061 |
cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatccccattttttaa |
11176962 |
T |
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| Q |
423 |
actatcttcgaactagatga |
442 |
Q |
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|| ||||||||||||||||| |
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| T |
11176961 |
accatcttcgaactagatga |
11176942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 430
Target Start/End: Complemental strand, 11157315 - 11157208
Alignment:
| Q |
323 |
cctaatgggtgttgcaagttaaatataaaagataacgaatggggatttagatttatgtttacctttcaccaagagctacaaaggaatccccattttttaa |
422 |
Q |
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|||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||| ||| | || |
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| T |
11157315 |
cctaatgggttttgcaagttaagtaaaaaaggtaacgaattgggatctagatttatgtttacctttcatcaagagctccaaaggaatccccgtttgtgaa |
11157216 |
T |
|
| Q |
423 |
actatctt |
430 |
Q |
| |
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| |||||| |
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|
| T |
11157215 |
aatatctt |
11157208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 11177333 - 11177156
Alignment:
| Q |
66 |
cgcccccattcgagtttctcttcaaacctttgctgctgccaccattattattaaccacctt---------attatcgtcaaacaccatcatatcaaaagt |
156 |
Q |
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||||||||||| | ||||||||||| |||||| ||| ||||| |||||||||||| ||||| |||||| |||| |||||||||||||||| | |
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| T |
11177333 |
cgcccccattcaaatttctcttcaatcctttgttgccgccactattattattaactaccttctttttttgattatcatcaagcaccatcatatcaaaatt |
11177234 |
T |
|
| Q |
157 |
ttcaatcccaggtttgttatcaacatcaacaac---------ttcagtttccatcatcgaagccacactgtttatttt |
225 |
Q |
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||| ||| ||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11177233 |
ttctatcgcaggtctattatcaatatcaacaacaccttcagcttcagtttccatcatcgaagccacactgtttatttt |
11177156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 11164247 - 11164181
Alignment:
| Q |
365 |
ggatttagatttatgtttacctttcaccaagagctacaaaggaatccccattttttaaactatcttc |
431 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||| |||||| |
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| T |
11164247 |
ggatttagatttatgtttacctttcatcaaaagctccaaaggaatccccatttttgaaaccatcttc |
11164181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 4703618 - 4703727
Alignment:
| Q |
22 |
cttcttcggtcggcctctactgcgtcgtggcgcctcaatgctcccgcccccattcgagtttctcttcaaacctttgctgctgccaccattattattaacc |
121 |
Q |
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||||||||||| |||||||| || || |||||||||||| || |||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
4703618 |
cttcttcggtctgcctctaccacgccgcggcgcctcaatgtctcctcccccatttgagtttctcttcaaacctttgttgcagccaccattattattaact |
4703717 |
T |
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| Q |
122 |
accttattat |
131 |
Q |
| |
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||||| |||| |
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| T |
4703718 |
accttcttat |
4703727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 4703773 - 4703833
Alignment:
| Q |
156 |
tttcaatcccaggtttgttatcaacatcaacaacttcagtttccatcatcgaagccacact |
216 |
Q |
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|||| ||| ||| ||| ||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
4703773 |
tttctatcacagttttattatcaatatcaacaatgtcagtttccatcatcgaagccacact |
4703833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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