View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_low_8 (Length: 445)
Name: NF1327_low_8
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 445
Target Start/End: Complemental strand, 38264021 - 38263579
Alignment:
| Q |
30 |
aagaagagatctcgtgtcaagtgtaaagatttgtaactttgaagtttgaaccctagtcaaccctgacaccacctaccttcatcagtcatcagtgttggct |
129 |
Q |
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| T |
38264021 |
aagaagagatctcgtgtcaagtgtaaagatttgtaactttgaagtttgaaccctagtcaaccctgacaccacctaccttcatcagtcatcagtgttggct |
38263922 |
T |
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| Q |
130 |
ttaagaataa-aaaatggactt-agtgtgtgtttggttggtgaagggcatcaactca--ttaagtcaccgtnnnnnnnnnctcacataagtgagcagctc |
225 |
Q |
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| T |
38263921 |
ttaagaataaaaaaatggacttaagtgtgtgtttggttggtgaagggcatcaactcatgttaagtcaccgt-aaaaaaaactcacataagtgagcaggtc |
38263823 |
T |
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| Q |
226 |
atatataacaaggttttaaactagaatgcagatcctctccatttcc--------ttgagatctcaatttctttaca-----tggtgtgctgctacacaaa |
312 |
Q |
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| T |
38263822 |
atatataacaaggttttaaactagaatgcagatcctctccatttccttagaaaattgagatctcaatttctttacatggtgtggtgtgctgctacacaaa |
38263723 |
T |
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| Q |
313 |
cactaacttattgttaccactaatagtcatttctacatcatggaccttgtaccgttgtcacgcca-----------ctattttgtgaaatccatttgatc |
401 |
Q |
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| T |
38263722 |
tactaacttattattaccactaatagtcatttctacatcatggaccttgtaccgttgtcacgccactccaacacctctattttgtgaaatccatttgatc |
38263623 |
T |
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| Q |
402 |
cctcattttgaagtgctttactgtcttgtcccaccaccataaca |
445 |
Q |
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| T |
38263622 |
cctcattttgaagtgctttactgtctcgtcccaccaccgtaaca |
38263579 |
T |
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