View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13280_low_1 (Length: 473)
Name: NF13280_low_1
Description: NF13280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13280_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 5 - 449
Target Start/End: Original strand, 8284698 - 8285142
Alignment:
| Q |
5 |
aatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatt |
104 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
8284698 |
aatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttcaaacccctactggaaccgatt |
8284797 |
T |
|
| Q |
105 |
tacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
204 |
Q |
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| T |
8284798 |
tacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacaccaccacataggtttaatcactt |
8284897 |
T |
|
| Q |
205 |
atctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatc |
304 |
Q |
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| T |
8284898 |
atctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgtacctctagttaatcatgagatc |
8284997 |
T |
|
| Q |
305 |
accatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtacc |
404 |
Q |
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| T |
8284998 |
accatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaatgaatatgattcacatgtacc |
8285097 |
T |
|
| Q |
405 |
agcaagacccacaacttaattttggtgttgctacaacatcaagca |
449 |
Q |
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| T |
8285098 |
agcaagacccacaacttaattttggtgttgctacaacatcaagca |
8285142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 432
Target Start/End: Original strand, 34687150 - 34687225
Alignment:
| Q |
357 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgt |
432 |
Q |
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| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgt |
34687225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
10 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
109 |
Q |
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| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
|
| Q |
110 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
206 |
Q |
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| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
|
| Q |
207 |
ctggttt |
213 |
Q |
| |
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||||||| |
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|
| T |
34694953 |
ctggttt |
34694959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 260 - 432
Target Start/End: Original strand, 34694979 - 34695151
Alignment:
| Q |
260 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
359 |
Q |
| |
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||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
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| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
|
| Q |
360 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgt |
432 |
Q |
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| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgt |
34695151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
93 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
181 |
Q |
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||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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