View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13280_low_2 (Length: 418)
Name: NF13280_low_2
Description: NF13280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13280_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 37319561 - 37319845
Alignment:
| Q |
1 |
caattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatgaaattctaaaa |
100 |
Q |
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| T |
37319561 |
caattatttcattatttgacaaaataagagacaaatgatagatttgttgtagaaaattaaaatatattacttcattacagaaatctatgaaattctaaaa |
37319660 |
T |
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| Q |
101 |
atagctatcctgattgatcaataatatgaatacagttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaaagaaataaag |
200 |
Q |
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| T |
37319661 |
atagcaatgctgattgatcaataatatgaatacggttacaagtaaaatttgttatggacatatttaaataggatattgaaatcttagaaaagaaataaag |
37319760 |
T |
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| Q |
201 |
taaaagaaatcctgaagtaaaactcagaataatttttctaaaacacaccttgttgctcacttggactagtgtgttctagacagtg |
285 |
Q |
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| T |
37319761 |
taaaagaaatcctgaagtaaaactcagaataaattttctaaaacaaacctagttgctcacttggactagtgtgttctagacagtg |
37319845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 285 - 400
Target Start/End: Original strand, 37319983 - 37320098
Alignment:
| Q |
285 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
384 |
Q |
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| T |
37319983 |
gaaacaaaaaatgattccctttcttttttgtttaatgctatccacacatattacctttatcaagtcagtgtctcctttccctttcctttaccaaccacaa |
37320082 |
T |
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| Q |
385 |
agtctatgacattaac |
400 |
Q |
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| T |
37320083 |
agtctatgacattaac |
37320098 |
T |
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