View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13281_high_1 (Length: 718)

Name: NF13281_high_1
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13281_high_1
NF13281_high_1
[»] chr7 (1 HSPs)
chr7 (1-695)||(7653949-7654644)


Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Original strand, 7653949 - 7654644
Alignment:
Q  1 taggattacttcttgtgcaagaaacatattagaaaccnnnnnnnnnnnnnnnnnnccatcttgtgcaagaaacccacttgaaggatactattgatacatt 100  Q
    |||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||| ||||||||||||    
T  7653949 taggattacttcttgtgcaagaaacatattagaaaccaaaaagtaaaaaagaaaaccatcttgtgcaagaaacccacttgaaggatattattgatacatt 7654048  T
Q  101 gatgattaatatgaaagtatatgtggctagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtcacaacacaatttata 200  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654049 gatgattaatatgaaagtatatgtgattagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtcacaacacaatttata 7654148  T
Q  201 atatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtttgtcctcaaatgtta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7654149 atatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtttgtcctcaaatgtta 7654248  T
Q  301 aggctacccgttactttcggtgaaaatattacactatcataatcaaccaatggtttttactatgatctccaatttcacctacagctacatcaattcacag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7654249 aggctacccgttactttcggtgaaaatattacactatcataatcaaccaatggtttttactgtgatctccaatttcacctacagctacatcaattcacag 7654348  T
Q  401 ccacatacatgtcaaaactatgaccaagtagctcactcacttcactagctgcatgca----tggcacatataattgaaacctatacagtctcacacagtg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||||||    
T  7654349 ccacatacatgtcaaaactatgaccaagtagctcactcacttcactagctgcatgcatagcttgcacatataattgaaacctatacagtctcacacagtg 7654448  T
Q  497 accgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtttccccttaatttcaaccaaattatacagaaaagaaatataatc 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||    
T  7654449 accgtttccttggccgtttattttggtatttaaacactaaacaaagctcttatagtgtccccttaatttcaaccaaattata---aaaagaaatataatc 7654545  T
Q  597 aagaaacacataaataagaatctgatcttctcttttgatctgtttctataggttctgattcttgagataattaataataataatggcaatccatagaat 695  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||  |||||||||  ||||||||||||||||||||||||||||||||    
T  7654546 aagaaacacataaataagaatctgatcttctctttttatctgtttctataagtttcgattcttgaactaattaataataataatggcaatccatagaat 7654644  T

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