View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_high_11 (Length: 316)
Name: NF13281_high_11
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 18418795 - 18419097
Alignment:
| Q |
1 |
atgaacatgtatcggtgccactgcgagacatgtttgtttgtgcgaattagtctttactttgggtggctcaaatagggacctcagaacgtctgaaatctgt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |
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| T |
18418795 |
atgaacatgtatcagtgccactgcgagacatgtttgtttgtgcgaattagtctttactttggatggctcaaatagggacctcagaacatatgaaatctgt |
18418894 |
T |
|
| Q |
101 |
gggggcgggtgttgtgccagtttggttgtgtccaaaccatccctttgcgggacctcgtagtgttgtgtgtagtaccttgatcatgtgctaagagcacatg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18418895 |
gggggcgggtgttgtgccagtttggttatgtccaaactatccccatgcgggacctcgcagtgttgtgtgtagtaccttggtcatgtgctaagagcacatg |
18418994 |
T |
|
| Q |
201 |
atttaggtctgcttgctccgactggtctagacatagcaactggatacatgaggtggttttatgccatttcacattcatacatcataactccgcatgatga |
300 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18418995 |
atttaggtctgcctgctccgattggtctagacatagcagctggatacatgaggtggttttatgccatttcacattcatacatcataactccgcatgatga |
18419094 |
T |
|
| Q |
301 |
tgt |
303 |
Q |
| |
|
||| |
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| T |
18419095 |
tgt |
18419097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 11152471 - 11152419
Alignment:
| Q |
240 |
ctggatacatgaggtggttttatgccatttcacattcatacatcataactccg |
292 |
Q |
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| T |
11152471 |
ctggatacatgatctggttttctgccatttcacattcatacatcataactccg |
11152419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24141729 - 24141589
Alignment:
| Q |
1 |
atgaacatgtatcggtgccactgcgagacatgtttgtttgtgcgaattagtctttactttgggtggctcaaatagggacctcagaacgtctgaaatctgt |
100 |
Q |
| |
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|||||| |||||| | |||| || |||||||| ||| | |||||| |||||||| ||||| || |||| ||| ||||||| | ||| || ||||| |
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| T |
24141729 |
atgaacctgtatcagccccaccgccagacatgtccgttcgagcgaatcagtctttattttggatgcctcagatatggacctcgcagggtccgatatctgc |
24141630 |
T |
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| Q |
101 |
gggggcgggtgttgtgccagtttggttgtgtccaaaccatc |
141 |
Q |
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| T |
24141629 |
tggagcgggtgttgtgccagtttggttacgtccaaaccatc |
24141589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 25580036 - 25579961
Alignment:
| Q |
216 |
ctccgactggtctagacatagcaactggatacatgaggtggttttatgccatttcacattcatacatcataactcc |
291 |
Q |
| |
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|||||||||||||||| | || | |||||| ||||| || || | ||||||||||||| |||||||||||||||| |
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| T |
25580036 |
ctccgactggtctagagacagaagttggataaatgagatgattgtctgccatttcacatccatacatcataactcc |
25579961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 9402728 - 9402674
Alignment:
| Q |
201 |
atttaggtctgcttgctccgactggtctagacatagcaactggatacatgaggtg |
255 |
Q |
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|||||||| ||| |||||||||||||||||| || | ||| |||||||||||||| |
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| T |
9402728 |
atttaggtttgcgtgctccgactggtctagagatggaaaccggatacatgaggtg |
9402674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 33358374 - 33358411
Alignment:
| Q |
245 |
tacatgaggtggttttatgccatttcacattcatacat |
282 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| |
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| T |
33358374 |
tacatgagatggttttatgccatttcacatccatacat |
33358411 |
T |
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