View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13281_high_5 (Length: 515)

Name: NF13281_high_5
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13281_high_5
NF13281_high_5
[»] chr1 (33 HSPs)
chr1 (18-466)||(37189565-37190010)
chr1 (338-505)||(10824546-10824714)
chr1 (338-505)||(22683143-22683311)
chr1 (338-466)||(18844461-18844589)
chr1 (338-453)||(37189370-37189484)
chr1 (338-452)||(15825752-15825864)
chr1 (338-466)||(19056152-19056280)
chr1 (338-502)||(19056330-19056496)
chr1 (338-453)||(18844678-18844794)
chr1 (348-464)||(10824380-10824496)
chr1 (213-334)||(38859908-38860029)
chr1 (215-334)||(10155968-10156087)
chr1 (274-334)||(48392417-48392477)
chr1 (379-466)||(22683358-22683445)
chr1 (215-334)||(47022759-47022878)
chr1 (274-334)||(3346843-3346903)
chr1 (274-334)||(30745401-30745461)
chr1 (274-334)||(30766852-30766912)
chr1 (402-453)||(22683290-22683341)
chr1 (276-334)||(23908342-23908400)
chr1 (215-334)||(49902525-49902644)
chr1 (277-334)||(42456629-42456686)
chr1 (215-313)||(42517246-42517344)
chr1 (274-334)||(7742790-7742850)
chr1 (276-334)||(13131953-13132011)
chr1 (276-334)||(29149561-29149619)
chr1 (276-334)||(44462491-44462549)
chr1 (274-334)||(5558366-5558425)
chr1 (274-334)||(10907659-10907719)
chr1 (275-334)||(5975045-5975104)
chr1 (402-453)||(10824516-10824567)
chr1 (402-453)||(19056297-19056348)
chr1 (274-334)||(26835395-26835455)
[»] chr8 (27 HSPs)
chr8 (338-466)||(13884491-13884619)
chr8 (332-505)||(42126378-42126553)
chr8 (338-465)||(13884706-13884833)
chr8 (338-505)||(29714544-29714712)
chr8 (332-466)||(11867899-11868032)
chr8 (345-466)||(2554067-2554188)
chr8 (346-448)||(29714777-29714879)
chr8 (338-466)||(42126601-42126729)
chr8 (215-334)||(42072485-42072604)
chr8 (215-334)||(35806851-35806970)
chr8 (274-334)||(16591386-16591446)
chr8 (274-334)||(21525415-21525475)
chr8 (275-327)||(16523170-16523222)
chr8 (382-464)||(14996678-14996761)
chr8 (276-334)||(22324653-22324711)
chr8 (274-327)||(26021460-26021513)
chr8 (405-453)||(2554002-2554050)
chr8 (274-334)||(24065330-24065390)
chr8 (274-334)||(33934380-33934440)
chr8 (274-334)||(42013929-42013989)
chr8 (402-453)||(14996608-14996659)
chr8 (338-433)||(43416265-43416360)
chr8 (274-327)||(16818984-16819037)
chr8 (274-334)||(19334840-19334900)
chr8 (402-453)||(29714691-29714742)
chr8 (354-430)||(26745991-26746067)
chr8 (275-327)||(43282863-43282915)
[»] chr2 (30 HSPs)
chr2 (338-503)||(2916380-2916545)
chr2 (338-505)||(16973066-16973234)
chr2 (338-466)||(44594455-44594583)
chr2 (339-505)||(38982734-38982901)
chr2 (338-466)||(16973281-16973409)
chr2 (338-466)||(40987659-40987787)
chr2 (338-453)||(44594250-44594366)
chr2 (338-453)||(38982559-38982674)
chr2 (338-453)||(11533674-11533790)
chr2 (339-466)||(2916594-2916721)
chr2 (361-505)||(24126107-24126245)
chr2 (338-466)||(13559519-13559646)
chr2 (275-334)||(6318470-6318529)
chr2 (361-466)||(24125876-24125975)
chr2 (215-334)||(29846499-29846618)
chr2 (215-334)||(42769710-42769829)
chr2 (213-334)||(3956629-3956750)
chr2 (342-430)||(40987899-40987987)
chr2 (215-334)||(14186390-14186509)
chr2 (338-403)||(24125672-24125737)
chr2 (274-334)||(14942055-14942115)
chr2 (274-334)||(40277299-40277359)
chr2 (274-334)||(41674717-41674777)
chr2 (402-453)||(16973213-16973264)
chr2 (275-334)||(33009730-33009789)
chr2 (276-334)||(2888098-2888156)
chr2 (274-334)||(19181605-19181665)
chr2 (402-453)||(38982704-38982755)
chr2 (402-453)||(44594385-44594436)
chr2 (274-334)||(14539715-14539775)
[»] chr3 (34 HSPs)
chr3 (335-505)||(46003425-46003596)
chr3 (338-466)||(40244627-40244756)
chr3 (338-466)||(51663467-51663595)
chr3 (338-505)||(51663252-51663420)
chr3 (340-505)||(20537930-20538097)
chr3 (339-447)||(40364194-40364301)
chr3 (338-466)||(20538151-20538279)
chr3 (339-466)||(46003251-46003378)
chr3 (338-466)||(40364043-40364171)
chr3 (275-334)||(3178760-3178819)
chr3 (275-334)||(13856156-13856215)
chr3 (274-334)||(10839391-10839451)
chr3 (338-398)||(40244873-40244933)
chr3 (275-334)||(5391514-5391573)
chr3 (215-334)||(8950456-8950575)
chr3 (276-334)||(19649385-19649443)
chr3 (215-334)||(21853254-21853373)
chr3 (274-335)||(6280370-6280431)
chr3 (210-334)||(44994915-44995040)
chr3 (276-327)||(20382583-20382634)
chr3 (402-453)||(46003395-46003446)
chr3 (274-334)||(1781819-1781879)
chr3 (274-334)||(36539689-36539749)
chr3 (274-334)||(40845928-40845988)
chr3 (274-334)||(54546961-54547021)
chr3 (276-334)||(19644340-19644398)
chr3 (276-334)||(23467507-23467565)
chr3 (274-327)||(27642724-27642777)
chr3 (274-334)||(32352904-32352964)
chr3 (274-334)||(39352251-39352310)
chr3 (274-334)||(43347347-43347407)
chr3 (402-448)||(20538076-20538122)
chr3 (274-335)||(33103799-33103860)
chr3 (294-334)||(47889783-47889823)
[»] chr4 (34 HSPs)
chr4 (332-505)||(39161284-39161457)
chr4 (338-453)||(50509358-50509473)
chr4 (333-466)||(55173470-55173603)
chr4 (338-452)||(47096802-47096914)
chr4 (338-466)||(39161504-39161632)
chr4 (339-448)||(37996068-37996177)
chr4 (338-453)||(55173336-55173452)
chr4 (213-334)||(17888500-17888621)
chr4 (213-334)||(31377447-31377567)
chr4 (338-466)||(47097017-47097142)
chr4 (274-332)||(11054515-11054573)
chr4 (215-334)||(16338165-16338284)
chr4 (215-334)||(1535828-1535947)
chr4 (276-334)||(52632575-52632633)
chr4 (274-334)||(49284414-49284474)
chr4 (338-385)||(2623449-2623496)
chr4 (276-333)||(12792244-12792301)
chr4 (274-327)||(37801275-37801328)
chr4 (274-327)||(47084076-47084129)
chr4 (274-334)||(20818624-20818684)
chr4 (274-334)||(34241050-34241110)
chr4 (274-334)||(36012196-36012256)
chr4 (274-334)||(50328853-50328913)
chr4 (276-327)||(10094406-10094457)
chr4 (274-334)||(25954807-25954867)
chr4 (275-334)||(9742545-9742604)
chr4 (402-453)||(39161436-39161487)
chr4 (276-334)||(35322717-35322775)
chr4 (276-334)||(46583554-46583612)
chr4 (298-334)||(322584-322620)
chr4 (354-430)||(9738136-9738212)
chr4 (274-326)||(19124749-19124801)
chr4 (274-334)||(46474051-46474111)
chr4 (402-453)||(47096947-47096999)
[»] scaffold0060 (1 HSPs)
scaffold0060 (338-466)||(22922-23050)
[»] chr5 (23 HSPs)
chr5 (338-505)||(21249364-21249532)
chr5 (213-334)||(8456913-8457034)
chr5 (216-334)||(38397655-38397773)
chr5 (275-334)||(10081202-10081261)
chr5 (215-334)||(6257362-6257481)
chr5 (275-334)||(9737993-9738054)
chr5 (276-334)||(11856352-11856410)
chr5 (276-334)||(42119679-42119737)
chr5 (274-334)||(23218542-23218602)
chr5 (275-334)||(16618582-16618641)
chr5 (275-334)||(25560339-25560398)
chr5 (274-333)||(29491425-29491483)
chr5 (275-334)||(33271282-33271341)
chr5 (337-387)||(21249629-21249679)
chr5 (215-334)||(37168985-37169104)
chr5 (215-334)||(39862439-39862558)
chr5 (275-334)||(29790231-29790290)
chr5 (402-452)||(21249511-21249561)
chr5 (209-334)||(15631670-15631796)
chr5 (274-334)||(614403-614463)
chr5 (274-334)||(36769085-36769145)
chr5 (277-326)||(15475408-15475457)
chr5 (274-326)||(27916205-27916257)
[»] chr7 (30 HSPs)
chr7 (339-466)||(28715645-28715772)
chr7 (338-466)||(41985912-41986040)
chr7 (333-448)||(30862215-30862330)
chr7 (332-466)||(28715859-28715993)
chr7 (338-466)||(6474282-6474411)
chr7 (332-505)||(6474458-6474631)
chr7 (338-505)||(47373464-47373633)
chr7 (353-466)||(47373679-47373792)
chr7 (339-466)||(30862437-30862564)
chr7 (338-408)||(41986183-41986253)
chr7 (215-334)||(44164695-44164814)
chr7 (332-389)||(22226666-22226723)
chr7 (274-334)||(19334571-19334631)
chr7 (274-334)||(29981124-29981184)
chr7 (215-334)||(34259575-34259694)
chr7 (215-334)||(34707173-34707292)
chr7 (274-334)||(10576730-10576790)
chr7 (274-334)||(32876541-32876601)
chr7 (275-334)||(29555951-29556010)
chr7 (275-334)||(33057669-33057728)
chr7 (215-334)||(29238095-29238214)
chr7 (354-462)||(6271188-6271296)
chr7 (274-334)||(9770716-9770776)
chr7 (274-334)||(15017830-15017890)
chr7 (274-334)||(17303125-17303185)
chr7 (274-334)||(24320450-24320510)
chr7 (354-430)||(38408153-38408229)
chr7 (402-452)||(41986058-41986108)
chr7 (475-505)||(41986087-41986117)
chr7 (274-334)||(10334235-10334295)
[»] chr6 (22 HSPs)
chr6 (331-462)||(24798843-24798974)
chr6 (338-448)||(2216813-2216923)
chr6 (341-505)||(11643754-11643919)
chr6 (338-466)||(18494736-18494862)
chr6 (353-466)||(24798642-24798755)
chr6 (332-453)||(11643979-11644099)
chr6 (338-504)||(18494911-18495077)
chr6 (338-430)||(24690357-24690449)
chr6 (335-418)||(24690611-24690694)
chr6 (215-334)||(9231806-9231925)
chr6 (274-334)||(14309809-14309869)
chr6 (215-326)||(13627605-13627716)
chr6 (274-326)||(1727944-1727996)
chr6 (274-334)||(24694662-24694722)
chr6 (278-334)||(27863756-27863812)
chr6 (402-453)||(11643898-11643949)
chr6 (401-454)||(24798769-24798822)
chr6 (274-334)||(13103129-13103189)
chr6 (274-334)||(28750661-28750721)
chr6 (354-409)||(9955643-9955698)
chr6 (354-452)||(9954825-9954923)
chr6 (274-334)||(24497585-24497645)
[»] scaffold0781 (1 HSPs)
scaffold0781 (338-448)||(5270-5380)
[»] scaffold0079 (1 HSPs)
scaffold0079 (215-334)||(54576-54695)
[»] scaffold0086 (1 HSPs)
scaffold0086 (274-334)||(20842-20902)
[»] scaffold0045 (1 HSPs)
scaffold0045 (274-330)||(34463-34519)
[»] scaffold0034 (1 HSPs)
scaffold0034 (396-452)||(108055-108111)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 37190010 - 37189565
Alignment:
Q  18 gatccattgtattggagctggagatcatctcctgaatcaaggtaaacttgctttaatttcaactccttttgtttaagcttttcatgctactgaatccaat 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  37190010 gatccattgtattggagctggagaccatctcctgaatcaaggtaaacttgctttaatttcaactccttttgtttaagcttatcatgctactcaatccaat 37189911  T
Q  118 accggcacgttaataacacaaatttaaaatccctcgnnnnnnntaacacaaatttaaaatgtattttaaatttgaaccatgttgtcaagtgctctatggg 217  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189910 accggcacgttaataacacaaatttaaaatccctcgaaaaaaataacacaaatttaaaatgtattttaaatttgaaccatgttgtcaagtgctctatggg 37189811  T
Q  218 cggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaatctc 317  Q
    |||||||||||||| | || |||||||||||||  ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  37189810 cggttctatggcca-gtga-cccaggcattcgcccggactccggcccaa-atttttgcaatttcttatgtaaatctctatgaatttcttatataaatctc 37189714  T
Q  318 tataaattggacaatttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37189713 tataaattggacaatttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcc 37189614  T
Q  418 cgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 466  Q
    | |||||||||||||| |||||||||||||| |||| ||||||||||||    
T  37189613 cctatgttttgcttcgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 338 - 505
Target Start/End: Complemental strand, 10824714 - 10824546
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  10824714 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 10824615  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||||||||||||||||  |||||||||||         ||||||||||||||||||||| |||||||||    
T  10824614 tagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatg 10824546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 22683143 - 22683311
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | |||    
T  22683143 cttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttac 22683242  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||||||||||| | ||||||||||         |||||||||||||||||||||||||||||||    
T  22683243 tagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 18844461 - 18844589
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  18844461 cttattcaaccacatggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 18844560  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| ||||||||||||    
T  18844561 tagttttagtcatttctggtagtttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 37189370 - 37189484
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||| || |||    
T  37189370 cttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttac 37189468  T
Q  438 tagttttagtcctttc 453  Q
    ||||||||||||||||    
T  37189469 tagttttagtcctttc 37189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 15825864 - 15825752
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||| | ||     
T  15825864 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgttat 15825767  T
Q  438 tagttttagtccttt 452  Q
    |||||||||||||||    
T  15825766 tagttttagtccttt 15825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 19056152 - 19056280
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||| | |||    
T  19056152 cttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttac 19056251  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| | ||||||||||    
T  19056252 tagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 338 - 502
Target Start/End: Complemental strand, 19056496 - 19056330
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||||| ||||||||||||||  | |||||||||||| | |||    
T  19056496 cttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttac 19056397  T
Q  438 tagttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccct 502  Q
    ||||||||||| |||| |  |||||||||          ||||||||||||||||||||||||||||    
T  19056396 tagttttagtcatttctgtcagtttctctcaaaaaaaacgttaacttatgtaccaatttggtcccct 19056330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 453
Target Start/End: Complemental strand, 18844794 - 18844678
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 436  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  ||||||||||| || ||    
T  18844794 cttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgtta 18844695  T
Q  437 ctagttttagtcctttc 453  Q
    ||||||||||| |||||    
T  18844694 ctagttttagttctttc 18844678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 464
Target Start/End: Original strand, 10824380 - 10824496
Alignment:
Q  348 cacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagt 447  Q
    |||| ||||| ||||||||||||||| |  |||||||||||| ||  ||||||||||| |||||||||||  ||||||||||| || |||||||||||||    
T  10824380 cacccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagt 10824479  T
Q  448 cctttcgggtagtttct 464  Q
    |||||| | ||||||||    
T  10824480 cctttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 38860029 - 38859908
Alignment:
Q  213 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 312  Q
    |||||||||||||||||| ||||||||| |||| ||||  || |||||||||||        |||||||||||||||||  |||||||||||||||||||    
T  38860029 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataa 38859930  T
Q  313 atctctataaattggacaattt 334  Q
    | | ||||||||||| ||||||    
T  38859929 acccctataaattgggcaattt 38859908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 10155968 - 10156087
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||  ||||||||||||||||||||     
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 10156067  T
Q  315 ctctataaattggacaattt 334  Q
     |||||||||||||||||||    
T  10156068 ttctataaattggacaattt 10156087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 48392417 - 48392477
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  48392417 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 48392477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 379 - 466
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  379 aatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| || || | |||||||||||||||||||  ||||||||||| || |||||||||||||||||||   ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 47022878 - 47022759
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 47022779  T
Q  315 ctctataaattggacaattt 334  Q
      ||||||||| | ||||||    
T  47022778 tcctataaattaggcaattt 47022759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 3346903 - 3346843
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  3346903 gcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 3346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 30745461 - 30745401
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30745461 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30745401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 30766912 - 30766852
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30766912 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30766852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 22683290 - 22683341
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 22683341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 23908400 - 23908342
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| || |||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaattt 23908342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 49902644 - 49902525
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| || | |||||| || |||| ||||| || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  49902644 gggcggttctaaggtccggcgactccgggcactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 49902545  T
Q  315 ctctataaattggacaattt 334  Q
    | |||||||| || ||||||    
T  49902544 ccctataaatagggcaattt 49902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 42456686 - 42456629
Alignment:
Q  277 atttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  42456686 atttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 42456629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 313
Target Start/End: Original strand, 42517246 - 42517344
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaa 313  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaa 42517344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 7742790 - 7742850
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| ||||||||  ||||||||||||||||||| | ||||||||||| ||||||    
T  7742790 gcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaattt 7742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 13132011 - 13131953
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||  || | ||||| ||||||||||| ||||||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaattt 13131953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 29149561 - 29149619
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 29149619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 44462491 - 44462549
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| |||||||||||| | ||||||||||||| ||| ||||||||||| ||||||||    
T  44462491 aattttttatgtaaatctatctgaatttcttatacaaacctctataaattagacaattt 44462549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 5558425 - 5558366
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||| || |  |||||||||||||||| | ||||||||||||||||||    
T  5558425 gcaatttcttatgtaaacct-tccgaatttcttatataaacccctataaattggacaattt 5558366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 10907659 - 10907719
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||  ||||||||    
T  10907659 gcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaattt 10907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 5975104 - 5975045
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||| ||| |||||||||||||||| | ||||||||| | ||||||    
T  5975104 caatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaattt 5975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 10824567 - 10824516
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    |||||||||||| |||| ||||||||||| || | |||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttc 10824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 19056348 - 19056297
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| | |||||||||||| ||||||||| |||| ||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttc 19056297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 26835455 - 26835395
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| ||||||||||   |||||||||||||||||||   |||||||||| |||||||    
T  26835455 gcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaattt 26835395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 13884491 - 13884619
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||| |||    
T  13884491 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttac 13884590  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| ||||||||||||    
T  13884591 tagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 332 - 505
Target Start/End: Original strand, 42126378 - 42126553
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 431  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| | |  || |||||||||||| |||||||| ||| ||||||||||||    
T  42126378 tttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgctt 42126477  T
Q  432 cgatactagttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    || ||||||||||||||||||| ||||||||||||          ||||||||||||| |||||||||||||||||    
T  42126478 cgctactagttttagtcctttctggtagtttctctacaaaaaaacgttaacttatgtatcaatttggtcccctatg 42126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Complemental strand, 13884833 - 13884706
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  |||||||||||||| |||    
T  13884833 cttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttac 13884734  T
Q  438 tagttttagtcctttcgggtagtttctc 465  Q
    | |||||||||||||  | |||||||||    
T  13884733 tggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 29714544 - 29714712
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||| ||| |||||||| | |||    
T  29714544 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttac 29714643  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||| |||| || |||| | ||||||||||         |||||||||||||||||||||||| ||||||    
T  29714644 tagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatg 29714712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 332 - 466
Target Start/End: Complemental strand, 11868032 - 11867899
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 431  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||| |||||||||||  ||||||||| ||    
T  11868032 tttaggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatt 11867934  T
Q  432 cgatactagttttagtcctttcgggtagtttctct 466  Q
     |  |||||||||||||||||  | ||||||||||    
T  11867933 tgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 345 - 466
Target Start/End: Complemental strand, 2554188 - 2554067
Alignment:
Q  345 aatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttt 444  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| | |||||||||||| | |||| |||||    
T  2554188 aatcacctagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgtttt 2554089  T
Q  445 agtcctttcgggtagtttctct 466  Q
    ||| ||||| | ||||||||||    
T  2554088 agttctttctgttagtttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 346 - 448
Target Start/End: Complemental strand, 29714879 - 29714777
Alignment:
Q  346 atcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttta 445  Q
    |||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||||||||||  |||||||||||    
T  29714879 atcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagtttta 29714780  T
Q  446 gtc 448  Q
    |||    
T  29714779 gtc 29714777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 42126729 - 42126601
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||  || ||||||||  |  ||    
T  42126729 cttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcac 42126630  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    || |||||||| |||| | ||||||||||    
T  42126629 taattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 42072604 - 42072485
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    |||||||||||||||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42072505  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||||||||||    
T  42072504 ccctataaattggacaattt 42072485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 35806970 - 35806851
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| |||   || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 35806871  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  35806870 ccctataaattgggcaattt 35806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 16591386 - 16591446
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||    
T  16591386 gcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaattt 16591446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 21525475 - 21525415
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  21525475 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 21525415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 16523222 - 16523170
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  16523222 caatttcatatgtaaatccctatgaatttcttatataaatccctataaattgg 16523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 464
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  382 ttggtcccatatctataatttgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttcgggtagtttct 464  Q
    |||||||| ||  ||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||||| | ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 22324711 - 22324653
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  22324711 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 22324653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 26021513 - 26021460
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  26021513 gcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgg 26021460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 2554002 - 2554050
Alignment:
Q  405 accaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttc 2554050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 24065390 - 24065330
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| || |||||||||||||||||||||||||||   ||||||||||| ||||||    
T  24065390 gcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaattt 24065330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 33934380 - 33934440
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  33934380 gcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 33934440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 42013989 - 42013929
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  42013989 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 42013929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 14996608 - 14996659
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||| ||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttc 14996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 43416265 - 43416360
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcg 433  Q
    ||||||||||||   |||| |||||||||||||||||||| |||||  |||| || |||||||||||| ||||||  || | ||||||||| ||||    
T  43416265 cttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 16818984 - 16819037
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||| ||||||||||  ||||||||||||||||| | |||||||||||    
T  16818984 gcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgg 16819037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 19334900 - 19334840
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||| |||||   ||||||||| ||||||||| ||||||||||| ||||||||    
T  19334900 gcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaattt 19334840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 29714691 - 29714742
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||| | |||||||| || || |||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttc 29714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 26746067 - 26745991
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    ||||||||||||| ||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 26745991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 43282863 - 43282915
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||||||||||   | ||||||| ||||||||||| |||||||||||    
T  43282863 caatttcttatgtaaattcttctgaatttattatataaatccctataaattgg 43282915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 338 - 503
Target Start/End: Original strand, 2916380 - 2916545
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  2916380 cttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 2916479  T
Q  438 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtccccta 503  Q
    |||||||| ||||||| | ||||||||||        |||||||||||||||||||||||||||||    
T  2916480 tagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 16973066 - 16973234
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||| |||    
T  16973066 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttac 16973165  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||| | ||||| | ||||||||||         |||||||||||||||||||||||||||||||    
T  16973166 tagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||||| |||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| ||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 38982901 - 38982734
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| || |||||||||||||  ||||    
T  38982901 ttattcagtcaccaagtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattact 38982802  T
Q  439 agttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||||| |||| ||||||||||||         |||||||||||||||||||||||||| ||||    
T  38982801 agttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 38982734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 16973409 - 16973281
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||  ||||||||||| |  |||    
T  16973409 cttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattac 16973310  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| |  |||||||||    
T  16973309 tagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 40987659 - 40987787
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||| ||||| | |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||| | ||||||||| || | |||    
T  40987659 cttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttac 40987758  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||  | ||||||||||    
T  40987759 tagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 44594250 - 44594366
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 436  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  |||||||||||  | ||    
T  44594250 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgtta 44594349  T
Q  437 ctagttttagtcctttc 453  Q
    ||||||||||| |||||    
T  44594350 ctagttttagttctttc 44594366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 38982559 - 38982674
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||  || || |||||||||||||||||||||||   |||||||||||||| | |    
T  38982559 cttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgttgc 38982658  T
Q  438 tagttttagtcctttc 453  Q
    ||||||||||||||||    
T  38982659 tagttttagtcctttc 38982674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 338 - 453
Target Start/End: Complemental strand, 11533790 - 11533674
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 436  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||  | |||||||||||||||||||||| ||| ||||||||||||   ||    
T  11533790 cttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttatta 11533691  T
Q  437 ctagttttagtcctttc 453  Q
    |||||||||||| ||||    
T  11533690 ctagttttagtcatttc 11533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 2916721 - 2916594
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||| |||  ||| |||||||  | ||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  439 agttttagtcctttcgggtagtttctct 466  Q
    |||||| |||||||| | ||||||||||    
T  2916621 agttttggtcctttctgttagtttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 361 - 505
Target Start/End: Complemental strand, 24126245 - 24126107
Alignment:
Q  361 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 460  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||||||||  | ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T
Q  461 ttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||||||         |||||||||||| ||||||||||| |||||    
T  24126151 ttctctaaaaaaacattaacttatgtatcaatttggtccactatg 24126107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 13559646 - 13559519
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||| || || |||||||||||| ||| |||||||| | || ||||||  | |||    
T  13559646 cttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgttac 13559548  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||| ||||||| |||  | ||||||||||    
T  13559547 tagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 6318470 - 6318529
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  6318470 caatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 6318529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 466
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  361 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 460  Q
    ||||||||| ||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||| | ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 29846618 - 29846499
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| | ||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29846519  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||||||||||    
T  29846518 ccctataaattggacaattt 29846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 42769710 - 42769829
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 42769809  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  42769810 ccctataaattgggcaattt 42769829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 3956750 - 3956629
Alignment:
Q  213 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 312  Q
    |||||||||||||||||| || |||||| |||| ||||  || |||||||||||        |||||| ||||||||||| |||||||||| ||||||||    
T  3956750 atgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataa 3956651  T
Q  313 atctctataaattggacaattt 334  Q
    | | || |||||||||||||||    
T  3956650 acccctgtaaattggacaattt 3956629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 40987987 - 40987899
Alignment:
Q  342 ttcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    |||||||||| |||| |||||||||||| |||||||||||||| |||  || ||||||||||||  ||||||||||| ||| |||||||    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgct 40987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 14186390 - 14186509
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| |||||||||||||| ||||  |  |||||| ||||       | |||||||| |||||||| ||||||||||||||||||||     
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaac 14186489  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  14186490 ccctataaattgggcaattt 14186509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 24125672 - 24125737
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttg 403  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  24125672 cttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 14942055 - 14942115
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  14942055 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 14942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 40277299 - 40277359
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  40277299 gcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaattt 40277359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 41674717 - 41674777
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||||||| ||||||| ||||||||| |  |||||||||||||||||    
T  41674717 gcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaattt 41674777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 16973213 - 16973264
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 16973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 33009789 - 33009730
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||| |||||| |||||||||| |||||||||||  |||||||||||||||||    
T  33009789 caatttcttatataaatccctatgaatttgttatataaatccttataaattggacaattt 33009730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 2888156 - 2888098
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||||||||||||| |||||||||   |||||||||| |||||||    
T  2888156 aatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaattt 2888098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 19181665 - 19181605
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  19181665 gcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 19181605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 38982755 - 38982704
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| ||||||||||| || | || ||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttc 38982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 44594436 - 44594385
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||| ||||| ||||||||||| || | |||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttc 44594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 14539715 - 14539775
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||| |  || ||||||||||||||||||  ||||||||| | ||||||    
T  14539715 gcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaattt 14539775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 505
Target Start/End: Complemental strand, 46003596 - 46003425
Alignment:
Q  335 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcga 434  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |||| | |||||||||||      
T  46003596 agacttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcat 46003497  T
Q  435 tactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||| |||||    
T  46003496 tactagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcctctatg 46003425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 40244627 - 40244756
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttgg-tcccgtatgttttgcttcgata 436  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||||||||||| | ||    
T  40244627 cttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgtta 40244726  T
Q  437 ctagttttagtcctttcgggtagtttctct 466  Q
    |||||||||||| |||| | ||||||||||    
T  40244727 ctagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 51663595 - 51663467
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||  | |||    
T  51663595 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttac 51663496  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| | ||||||||||    
T  51663495 tagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 51663252 - 51663420
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||| ||||||| |||| |||||||||||||||||| | ||| ||||||  || |||||||||||| |||||| ||||| |||||||||||||| |||    
T  51663252 cttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgttac 51663351  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||||||||||| |||| ||||||||||||         |||||||||||||| ||||||||||||||||    
T  51663352 tagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 505
Target Start/End: Original strand, 20537930 - 20538097
Alignment:
Q  340 tattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatacta 439  Q
    |||| ||||| ||||||||||||||||||||||  | |||||||| |||| || ||||||||||| ||||||||||||| |||||||||||||  |||||    
T  20537930 tattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattacta 20538029  T
Q  440 gttttagtcctttcgggtagtttctct--nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    ||||||||||||||   ||||||||||          ||||| |||||||||||||||||||||||||    
T  20538030 gttttagtcctttctattagtttctctaaaaaaaaacgttaatttatgtaccaatttggtcccctatg 20538097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||| |||| ||||||||| | || ||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgatccc-tatgttttgttccgttact 40364203  T
Q  439 agttttagt 447  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 20538279 - 20538151
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||| |||| || |||||||||||| |||||| ||    ||||||||||| || |||    
T  20538279 cttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttac 20538180  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||| | ||||||||||    
T  20538179 tagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 46003251 - 46003378
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||| || |  | |||     
T  46003251 ttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttaca 46003350  T
Q  439 agttttagtcctttcgggtagtttctct 466  Q
    ||||||||||||||  | ||||||||||    
T  46003351 agttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 40364043 - 40364171
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||| ||||||   ||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||| |||| | | ||||||| || ||     
T  40364043 cttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttat 40364142  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||  | ||||||||||    
T  40364143 tagttttagtcatttttgttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 3178819 - 3178760
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3178819 caatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaattt 3178760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 13856215 - 13856156
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  13856215 caatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaattt 13856156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 10839391 - 10839451
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||    
T  10839391 gcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaattt 10839451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 40244933 - 40244873
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctata 398  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||    
T  40244933 cttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 5391573 - 5391514
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  5391573 caatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 5391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 8950456 - 8950575
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || ||| || ||||       |||||||||| |||||||  |||||||||||||||||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaat 8950555  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  8950556 ccctataaattgggcaattt 8950575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 19649385 - 19649443
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  19649385 aatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaattt 19649443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 21853373 - 21853254
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| |||   || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaa 21853274  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  21853273 ccctataaattgggcaattt 21853254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 6280370 - 6280431
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 335  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||||||||| |||||||||    
T  6280370 gcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaattta 6280431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 44994915 - 44995040
Alignment:
Q  210 tctatgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttata 309  Q
    |||| ||||||||||| |||| ||||||||| || | ||||| || |||||| ||||       |||||||||| |||||||| ||||||||||||||||    
T  44994915 tctaggggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttata 44995014  T
Q  310 taaatctc-tataaattggacaattt 334  Q
    |||| | | |||||||||| ||||||    
T  44995015 taaaccccttataaattgggcaattt 44995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 20382634 - 20382583
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  20382634 aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgg 20382583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 46003446 - 46003395
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttc 46003395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 1781879 - 1781819
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||| || ||||||||||||||||| | | ||||||||| ||||||    
T  1781879 gcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaattt 1781819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 36539749 - 36539689
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||| |||| ||||||||||||||  | ||||||||||| ||||||    
T  36539749 gcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaattt 36539689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 40845928 - 40845988
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  40845928 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 40845988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 54547021 - 54546961
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||| ||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  54547021 gcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaattt 54546961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 19644340 - 19644398
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| ||||||||||  |||||||||| |||||||||||| ||||||||| |||||||    
T  19644340 aattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattt 19644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 23467507 - 23467565
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23467565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 27642777 - 27642724
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||||||||||||  | |||||||||||||||||||  ||||||||||    
T  27642777 gcaatttcttatgtaaatccttttgaatttcttatataaatccttataaattgg 27642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 32352964 - 32352904
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| | |||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  32352964 gcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaattt 32352904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 39352310 - 39352251
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||| ||||| ||| | |||||||||||||||||||||||||||  |||||||    
T  39352310 gcaatttcttat-taaatttctctaaatttcttatataaatctctataaatttaacaattt 39352251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 43347347 - 43347407
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||| ||||||| ||||||    
T  43347347 gcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaattt 43347407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtc 448  Q
    ||||||||||||||||| |||||||||||| | || |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 33103860 - 33103799
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 335  Q
    ||||||||||||||||||  |  | |||||||||||||| || |||||||||||| ||||||    
T  33103860 gcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataattta 33103799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 47889823 - 47889783
Alignment:
Q  294 ctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  47889823 ctatgaatttcttatataaattcctataaattgggcaattt 47889783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 332 - 505
Target Start/End: Original strand, 39161284 - 39161457
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 431  Q
    ||||| |||||||||||||| | ||| ||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  39161284 tttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctt 39161383  T
Q  432 cgatactagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    || ||||||||||||||||||| |  |||||||||         ||||||||||||||||||||||||| ||||    
T  39161384 cgttactagttttagtcctttctgaaagtttctctcaaaaaacattaacttatgtaccaatttggtcccatatg 39161457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 338 - 453
Target Start/End: Complemental strand, 50509473 - 50509358
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  50509473 cttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 50509374  T
Q  438 tagttttagtcctttc 453  Q
    || |||||||| ||||    
T  50509373 taattttagtcttttc 50509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 333 - 466
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  333 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 432  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||| |||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  433 gatactagttttagtcctttcgggtagtttctct 466  Q
    | |||| ||||||||| |||  | ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 452
Target Start/End: Original strand, 47096802 - 47096914
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||| | ||| |||||||||||||| |||    
T  47096802 cttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcgttac 47096899  T
Q  438 tagttttagtccttt 452  Q
    | |||||||||||||    
T  47096900 ttgttttagtccttt 47096914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 39161632 - 39161504
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||||| || | ||| ||||||||||||||||||| | ||||||||||| || ||||||||||||||||||| ||||  ||||||||||| || ||     
T  39161632 cttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttat 39161533  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    |||||||||||||||| | ||||||||||    
T  39161532 tagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 448
Target Start/End: Original strand, 37996068 - 37996177
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    ||||||||||||||| |||||||| | || ||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | || |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  439 agttttagtc 448  Q
    ||||||||||    
T  37996168 agttttagtc 37996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 453
Target Start/End: Original strand, 55173336 - 55173452
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 436  Q
    ||||||| |||| | ||| ||||||||||||||||||||| ||||||||||| || ||||||||||||  |||||||| ||| ||| ||||||| || ||    
T  55173336 cttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgtta 55173435  T
Q  437 ctagttttagtcctttc 453  Q
    |||||||||||||||||    
T  55173436 ctagttttagtcctttc 55173452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 17888500 - 17888621
Alignment:
Q  213 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 312  Q
    |||||||||||||||||||||||||||| |||| ||||  || |||||||||||        |||||||||||||||||  |||||||||||||||||||    
T  17888500 atgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataa 17888599  T
Q  313 atctctataaattggacaattt 334  Q
      | ||||||||||| ||||||    
T  17888600 ccccctataaattgggcaattt 17888621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 31377567 - 31377447
Alignment:
Q  213 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 312  Q
    |||||||||||||||||| ||||||||| |||| ||||  || |||||||||||        |||||||||||||||||| |||||||||||||||||||    
T  31377567 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataa 31377469  T
Q  313 atctctataaattggacaattt 334  Q
      ||||||||||||| ||||||    
T  31377468 ccctctataaattgggcaattt 31377447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 47097142 - 47097017
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | | || |||||||||||||||||||||||||| ||||  || |||||||||||||||||||| ||   ||||||||||  || |||    
T  47097142 cttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgatc---tatgttttgccccgttac 47097046  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    ||||||||||| |||  | ||||||||||    
T  47097045 tagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 11054573 - 11054515
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaat 332  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  11054573 gcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaat 11054515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 16338165 - 16338284
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||||||||  ||| ||||| ||||       ||||||| || |||||||  |||||||||| ||||||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 16338264  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||||||||||    
T  16338265 ccctataaattggacaattt 16338284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 1535947 - 1535828
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||  |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 1535848  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  1535847 ccctataaattgggcaattt 1535828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 52632633 - 52632575
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 52632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 49284474 - 49284414
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  49284474 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 49284414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 2623496 - 2623449
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttgg 385  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  2623496 cttattcaatcactcggtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 12792244 - 12792301
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 333  Q
    |||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  12792244 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaatt 12792301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 37801275 - 37801328
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||    
T  37801275 gcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgg 37801328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 47084129 - 47084076
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  47084129 gcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 47084076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 20818684 - 20818624
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  20818684 gcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaattt 20818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 34241110 - 34241050
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||| ||||||    
T  34241110 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaattt 34241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 36012196 - 36012256
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  36012196 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 36012256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 50328913 - 50328853
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||  || | ||||||||||||||| ||||||||||||||||||||    
T  50328913 gcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaattt 50328853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 10094406 - 10094457
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 327  Q
    |||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  10094406 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 10094457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 25954867 - 25954807
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||  ||||||||||||||||||||   ||||||||||| ||||||    
T  25954867 gcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaattt 25954807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 9742545 - 9742604
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||  || |||||||||||||| || | ||||||||||| ||||||    
T  9742545 caatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaattt 9742604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 39161436 - 39161487
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| ||||||||| | || | |||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttc 39161487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 35322717 - 35322775
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| |||| ||||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  35322717 aattttttatataaatttctctgaatctcttatataaacctctataaattgaacaattt 35322775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 46583554 - 46583612
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaattt 46583612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 322584 - 322620
Alignment:
Q  298 gaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||| | ||||||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaattt 322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 9738136 - 9738212
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 9738212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 19124749 - 19124801
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 326  Q
    ||||||||||||||||||  || |||||||||||||||||  ||| |||||||    
T  19124749 gcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattg 19124801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 46474111 - 46474051
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||| ||||||||| |  ||||||||| |||||||    
T  46474111 gcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaattt 46474051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 47096947 - 47096999
Alignment:
Q  402 tgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttc 453  Q
    |||||||||||||||||  ||||||||||| |  |||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttc 47096999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 23050 - 22922
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||  ||||||||||| || |||    
T  23050 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttac 22951  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    |||||||||||||||| | ||||||||||    
T  22950 tagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 21249364 - 21249532
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||| |||||||||||||| |||    
T  21249364 cttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgttac 21249463  T
Q  438 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||| ||||||| | ||||||||||         |||||||||||||||||||||||||| ||||    
T  21249464 tagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcccttatg 21249532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 8456913 - 8457034
Alignment:
Q  213 atgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataa 312  Q
    |||||||||||||||||| |||||||||| ||| ||||  || |||||||||||        |||||||||||||||||| |||||||||||||||||||    
T  8456913 atgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataa 8457012  T
Q  313 atctctataaattggacaattt 334  Q
      | ||||||||||| ||||||    
T  8457013 ccccctataaattgggcaattt 8457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 38397773 - 38397655
Alignment:
Q  216 ggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaatc 315  Q
    |||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| |||||||||||||||||||| |    
T  38397773 ggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacc 38397674  T
Q  316 tctataaattggacaattt 334  Q
     ||||||||||| ||||||    
T  38397673 cctataaattgggcaattt 38397655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 10081261 - 10081202
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10081261 caatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 6257362 - 6257481
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| |||||||||||||||| |||     
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaac 6257461  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  6257462 ccctataaattgggcaattt 6257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 9737993 - 9738054
Alignment:
Q  275 caatttcttatgtaaa--tctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||    
T  9737993 caatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaattt 9738054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 11856410 - 11856352
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaattt 11856352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 42119737 - 42119679
Alignment:
Q  276 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  42119737 aatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaattt 42119679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 23218602 - 23218542
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23218602 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23218542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 16618582 - 16618641
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||| ||||||||||||||||||||   ||||||||||||||||||    
T  16618582 caatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaattt 16618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 25560339 - 25560398
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||||    
T  25560339 caatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaattt 25560398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 29491425 - 29491483
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 333  Q
    |||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||    
T  29491425 gcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaatt 29491483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 33271282 - 33271341
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||||    
T  33271282 caatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaattt 33271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 21249679 - 21249629
Alignment:
Q  337 acttattcaatcacctggtcccttaacttaattgattgtctcaatttggtc 387  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  21249679 acttattcaatcatcttgtcccttaacttaattgattgtcttaatttggtc 21249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 37168985 - 37169104
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| | ||  || |||||| ||||       ||||||| || |||||||| ||||||||||||||||||||     
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaac 37169084  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  37169085 ccctataaattgggcaattt 37169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 39862439 - 39862558
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  |  |||||| ||||       |||||||||| |||||||  ||||||||||||||||||||     
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaac 39862538  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  39862539 ccctataaattgggcaattt 39862558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 29790231 - 29790290
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||   ||||||||||||||||||| || |||||||||| ||||||    
T  29790231 caatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaattt 29790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 15631796 - 15631670
Alignment:
Q  209 ctctatgggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttat 308  Q
    ||||| ||||||||||| |||| ||||||||| |||| ||||  || |||| | ||||        ||||||||| | |||||| |||||||||||||||    
T  15631796 ctctaggggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttat 15631697  T
Q  309 ataaa-tctctataaattggacaattt 334  Q
    |||||  | ||||||||||||||||||    
T  15631696 ataaaccccctataaattggacaattt 15631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 614403 - 614463
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||| ||||||||||| ||||||||| | ||||||    
T  614403 gcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaattt 614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 36769085 - 36769145
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||| |||| | ||||||    
T  36769085 gcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaattt 36769145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 15475408 - 15475457
Alignment:
Q  277 atttcttatgtaaatctctatgaatttcttatataaatctctataaattg 326  Q
    ||||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  15475408 atttcttatgtaaatttctcttaattttttatataaatctatataaattg 15475457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 27916257 - 27916205
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 326  Q
    ||||||||||||||||||  || |||||||||||||||||   ||||||||||    
T  27916257 gcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattg 27916205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||||||||  | || |||||||||||| |||||||||||| |||||||||||||| ||||    
T  28715645 ttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttact 28715744  T
Q  439 agttttagtcctttcgggtagtttctct 466  Q
    ||||||||||||||| ||||||||||||    
T  28715745 agttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 41985912 - 41986040
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||||| |||||||||||| | |||    
T  41985912 cttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttac 41986011  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    || ||||||||||||| | ||||||||||    
T  41986012 taattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 448
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  333 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 432  Q
    |||| ||||||||||||   ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  433 gatactagttttagtc 448  Q
    | ||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 332 - 466
Target Start/End: Complemental strand, 28715993 - 28715859
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 431  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||  || ||||||||     
T  28715993 tttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctc 28715894  T
Q  432 cgatactagttttagtcctttcgggtagtttctct 466  Q
     |  ||||||||||||| |||| | ||||||||||    
T  28715893 agtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 6474282 - 6474411
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatg-ttttgcttcgata 436  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||| |||| |||||||| | ||    
T  6474282 cttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtta 6474381  T
Q  437 ctagttttagtcctttcgggtagtttctct 466  Q
    |||||||||||| |||| | ||||||||||    
T  6474382 ctagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 332 - 505
Target Start/End: Complemental strand, 6474631 - 6474458
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 431  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||| | || |||||| ||||||| ||||| |||| |||| ||||||     
T  6474631 tttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctc 6474533  T
Q  432 cgatactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
     | ||||||||||||||||||  | ||||||||||         |||||||||||||||||||||||||| ||||    
T  6474532 tgttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 6474458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 338 - 505
Target Start/End: Original strand, 47373464 - 47373633
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccata--tctataatttgtaccaatttggtcccgtatgttttgcttcgat 435  Q
    |||||||||||||  | || ||||||||||||||||||||||||||| |||  ||  | |||||||||||||||||||||||| |||||||||||  | |    
T  47373464 cttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctgtt 47373563  T
Q  436 actagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
     |||||||||||| |||  | ||||||||||        |||||||||||||||||||| ||||||||||    
T  47373564 gctagttttagtcatttatgttagtttctctcaaaaaacgttaacttatgtaccaatttagtcccctatg 47373633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 353 - 466
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  353 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||| | ||||||||| |  | ||||||||||| ||||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  453 cgggtagtttctct 466  Q
      | ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 339 - 466
Target Start/End: Complemental strand, 30862564 - 30862437
Alignment:
Q  339 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 438  Q
    |||||||||||  ||||||||||| | |||||||||| ||||||| || || || |||||||||||| |||||||||||| |||||||||||  | ||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  439 agttttagtcctttcgggtagtttctct 466  Q
    | |||||||| |||| | ||||||||||    
T  30862464 aattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 41986253 - 41986183
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtacca 408  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||| |||| || |||||||||||||||    
T  41986253 cttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 44164695 - 44164814
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||| ||||  || |||||| ||||       |||||||||| ||||||| |||||||||||||||||||||     
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaac 44164794  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  44164795 ccctataaattgggcaattt 44164814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 22226723 - 22226666
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtccc 389  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22226723 tttaggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtccc 22226666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 19334571 - 19334631
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  19334571 gcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaattt 19334631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 29981124 - 29981184
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  29981124 gcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaattt 29981184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 34259694 - 34259575
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| |||||| || |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34259595  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  34259594 ccctataaattgggcaattt 34259575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 34707292 - 34707173
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| | || ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 34707193  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  34707192 ccctataaattgggcaattt 34707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 10576790 - 10576730
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10576790 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10576730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 32876541 - 32876601
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||||    
T  32876541 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaattt 32876601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 29555951 - 29556010
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||| |||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  29555951 caatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaattt 29556010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 33057669 - 33057728
Alignment:
Q  275 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||| |||||||||||||||||||  | |||||||||| |||||||    
T  33057669 caatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaattt 33057728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 29238095 - 29238214
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||| ||||| |||| ||||  || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 29238194  T
Q  315 ctctataaattggacaattt 334  Q
    | ||| |||||||| |||||    
T  29238195 ccctaaaaattggaaaattt 29238214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 462
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| || |  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || |||||||||  ||||||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  454 gggtagttt 462  Q
     | ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 9770776 - 9770716
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||||||||    ||||||||||||||||| | |||| |||||||||||||    
T  9770776 gcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaattt 9770716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 15017890 - 15017830
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || |||||||||||||||||    |||||||||||||||||    
T  15017890 gcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaattt 15017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 17303125 - 17303185
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  |||||||||||||||||||| |  | |||||||| ||||||    
T  17303125 gcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaattt 17303185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 24320450 - 24320510
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||  ||| |||||||||||||||| | ||||||||||| ||||||    
T  24320450 gcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaattt 24320510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 38408229 - 38408153
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    ||||||||||||||||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 38408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 505
Target Start/End: Complemental strand, 41986117 - 41986087
Alignment:
Q  475 gttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||||||||||||||||||||||||||    
T  41986117 gttaacttatgtaccaatttggtcccctatg 41986087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 10334295 - 10334235
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaa-tctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||||||||||||| ||| |||||||||| ||||||    
T  10334295 gcaatttcttatgtaaattcctctgaatttcttatataaactct-tataaattgggcaattt 10334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 24798974 - 24798843
Alignment:
Q  331 atttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    |||||| |||||||||||||| | |||||||| |||||||||||||| |||||| |||| || |||||||||||| |||||||||||| |||||||||||    
T  24798974 atttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct 24798875  T
Q  431 tcgatactagttttagtcctttcgggtagttt 462  Q
    ||| |||||||||||||||||||  |||||||    
T  24798874 tcgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 338 - 448
Target Start/End: Complemental strand, 2216923 - 2216813
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  2216923 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 2216824  T
Q  438 tagttttagtc 448  Q
    |||||||||||    
T  2216823 tagttttagtc 2216813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 341 - 505
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  341 attcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactag 440  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||| || |||||||||||| ||||||||| || ||||||||| || | ||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  441 ttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcccctatg 505  Q
    |||||||||| || | ||||||||||         |||||||||||||||||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 18494736 - 18494862
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||| ||||||| | |||    
T  18494736 cttattcaatcacatggtcccttaactttattgattgtctcaatttggtccc-tagctataatttgtaccattttggtcccctatg-tttgctttgttac 18494833  T
Q  438 tagttttagtcctttcgggtagtttctct 466  Q
    |||||||||||||||  | ||||||||||    
T  18494834 tagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 353 - 466
Target Start/End: Original strand, 24798642 - 24798755
Alignment:
Q  353 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    |||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||    
T  24798642 ggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcattt 24798741  T
Q  453 cgggtagtttctct 466  Q
    | | ||||||||||    
T  24798742 ctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 453
Target Start/End: Complemental strand, 11644099 - 11643979
Alignment:
Q  332 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||| |||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggtccc-tatgtttt-ct 11644002  T
Q  431 tcgatactagttttagtcctttc 453  Q
    | | |||||||||||||| ||||    
T  11644001 ttgttactagttttagtcttttc 11643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 338 - 504
Target Start/End: Complemental strand, 18495077 - 18494911
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| || |||||||||||||||||||| | | |||||| |||| || |||||||||||| |||||||||||| ||| ||||| | || ||     
T  18495077 cttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttat 18494978  T
Q  438 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcccctat 504  Q
    |||||||||| ||||| | ||||||||||        ||||||||||||| ||||||||||||||||    
T  18494977 tagttttagttctttctgttagtttctctaaaaaaacgttaacttatgtagcaatttggtcccctat 18494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 430
Target Start/End: Original strand, 24690357 - 24690449
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 430  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||  |||||||||||    
T  24690357 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 335 - 418
Target Start/End: Complemental strand, 24690694 - 24690611
Alignment:
Q  335 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtccc 418  Q
    ||||||||||||||||| | ||||||||||||||||||||| | |||||||| || || |||||||||||||||||||||||||    
T  24690694 agacttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtccc 24690611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 9231806 - 9231925
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||  ||||||||| |||| ||||  || |||||| ||||       |||||||||| |||||||||||||||||||||||||||||     
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaac 9231905  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||| ||||||    
T  9231906 ccctataaattgggcaattt 9231925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 14309809 - 14309869
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  14309809 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 14309869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 13627716 - 13627605
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| |||||||||| ||| |||   || |||||| ||||       |||||||||| |||||||| ||||||||||||||||||||     
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaac 13627617  T
Q  315 ctctataaattg 326  Q
    | ||||||||||    
T  13627616 ccctataaattg 13627605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 1727944 - 1727996
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 326  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  1727944 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 1727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 24694662 - 24694722
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  24694662 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 24694722  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 27863812 - 27863756
Alignment:
Q  278 tttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    |||||||||||||| ||| ||||||||||||||||| |  |||||||||||||||||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaattt 27863756  T

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Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 453
Target Start/End: Original strand, 11643898 - 11643949
Alignment:
Q  402 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 453  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttc 11643949  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 454
Target Start/End: Complemental strand, 24798822 - 24798769
Alignment:
Q  401 ttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcg 454  Q
    ||||| |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttcg 24798769  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 13103129 - 13103189
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| ||||||||||  || ||||||||||||||||| || |||||||||| ||||||    
T  13103129 gcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaattt 13103189  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 28750661 - 28750721
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||   | ||||||||||||||||| | ||||||||||| ||||||    
T  28750661 gcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaattt 28750721  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 9955698 - 9955643
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaa 409  Q
    ||||||||||||||||| |||| |||| |||||||| ||  |||||||||||||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaa 9955643  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 452
Target Start/End: Original strand, 9954825 - 9954923
Alignment:
Q  354 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || ||| |||||  |||||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtccttt 9954923  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 24497585 - 24497645
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||| || |||||||  || ||||||||||||||||| | ||||||||||| ||||||    
T  24497585 gcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaattt 24497645  T

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Target: scaffold0781 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 338 - 448
Target Start/End: Complemental strand, 5380 - 5270
Alignment:
Q  338 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 437  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  5380 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 5281  T
Q  438 tagttttagtc 448  Q
    |||||||||||    
T  5280 tagttttagtc 5270  T

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Target: scaffold0079 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 334
Target Start/End: Complemental strand, 54695 - 54576
Alignment:
Q  215 gggcggttctatggccaggcgaccccaggcattcgcttggactccggcccaannnnnnngcaatttcttatgtaaatctctatgaatttcttatataaat 314  Q
    ||||||||||| |||| ||||||||| |||||||||  ||| ||||| ||||       ||||||| || |||||||  |||||||||| ||||||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaat 54596  T
Q  315 ctctataaattggacaattt 334  Q
    | ||||||||||||||||||    
T  54595 ccctataaattggacaattt 54576  T

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Target: scaffold0086 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 20842 - 20902
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 334  Q
    ||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  20842 gcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaattt 20902  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 34463 - 34519
Alignment:
Q  274 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggaca 330  Q
    ||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||    
T  34463 gcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggaca 34519  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 452
Target Start/End: Original strand, 108055 - 108111
Alignment:
Q  396 ataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 452  Q
    |||||||||| |||||||||||  | ||||||||| |  ||||||||||||||||||    
T  108055 ataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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