View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13281_low_13 (Length: 322)

Name: NF13281_low_13
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13281_low_13
NF13281_low_13
[»] chr1 (7 HSPs)
chr1 (18-307)||(47463490-47463759)
chr1 (78-146)||(33858165-33858233)
chr1 (78-146)||(33922690-33922758)
chr1 (89-150)||(33185027-33185088)
chr1 (77-150)||(44288017-44288090)
chr1 (78-150)||(19636072-19636148)
chr1 (194-227)||(26047777-26047810)
[»] chr2 (7 HSPs)
chr2 (81-210)||(36421972-36422101)
chr2 (121-230)||(36425488-36425597)
chr2 (77-150)||(17315961-17316034)
chr2 (78-121)||(29264414-29264457)
chr2 (91-150)||(7154465-7154524)
chr2 (91-146)||(7893277-7893331)
chr2 (89-125)||(43631524-43631560)
[»] chr3 (6 HSPs)
chr3 (78-212)||(17120283-17120415)
chr3 (79-149)||(30484880-30484950)
chr3 (77-150)||(41654467-41654540)
chr3 (78-128)||(5171042-5171092)
chr3 (78-128)||(31203674-31203724)
chr3 (79-111)||(47598866-47598898)
[»] chr5 (3 HSPs)
chr5 (78-142)||(30874635-30874699)
chr5 (77-150)||(1375041-1375114)
chr5 (89-150)||(30212985-30213046)
[»] chr8 (6 HSPs)
chr8 (78-137)||(5124539-5124598)
chr8 (77-150)||(14362487-14362560)
chr8 (78-115)||(27707956-27707993)
chr8 (78-142)||(22893078-22893142)
chr8 (78-122)||(25029648-25029692)
chr8 (77-150)||(14390733-14390805)
[»] chr4 (7 HSPs)
chr4 (80-150)||(34559398-34559468)
chr4 (77-150)||(49600630-49600703)
chr4 (77-150)||(54857379-54857452)
chr4 (78-150)||(19238217-19238289)
chr4 (77-122)||(3125230-3125275)
chr4 (78-150)||(8368010-8368083)
chr4 (79-116)||(54857078-54857115)
[»] chr7 (6 HSPs)
chr7 (78-137)||(22696260-22696319)
chr7 (78-143)||(22023752-22023817)
chr7 (77-122)||(24375578-24375623)
chr7 (78-122)||(19423924-19423968)
chr7 (81-122)||(19835384-19835425)
chr7 (78-122)||(13726430-13726473)
[»] chr6 (2 HSPs)
chr6 (81-150)||(15584643-15584712)
chr6 (77-122)||(31462466-31462511)
[»] scaffold0380 (1 HSPs)
scaffold0380 (78-122)||(10514-10558)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 47463759 - 47463490
Alignment:
Q  18 aatagcagctgccggccaaccctaaacattggatagaaggaggatagcttacagcagtatgacaaattacatgaataatactacaaagtataaacaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47463759 aatagcagctgccggccaaccctaaacattggatagaaggaggatagcttatagcagtatgacaaattacatgaataatactataaagtataaacaaaca 47463660  T
Q  118 tatatttaatacaaaattaagtataacactcaaccaagttagtttaattcatcaaaattaagtataatggtgttagcagattaataaaattaaacgcatc 217  Q
    ||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47463659 tata---------------agtataacactcaaccaagttagtttaattcatcaaaattaagtataatggtgttagcagattaataaaattaaacgcatc 47463575  T
Q  218 acaagtagatgaagaagaagnnnnnnnnnnntcataggattcaacaaacatcatctgaagttagttttaacaatttaccagttgtcaatt 307  Q
    |||||||||||||||||||            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47463574 acaagtagatgaagaagaa-----aaaaaaatcatagtattcaacaaacatcatctgaagttagttttaacaatttaccagttgtcaatt 47463490  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 33858165 - 33858233
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacac 146  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  33858165 gacaaattacatgaataatactataaagtataaacaaacatatatttaatataaaattaaatataacac 33858233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 33922758 - 33922690
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacac 146  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  33922758 gacaaattacatgaataatactataaagtataaacaaacatatatttaatataaaattaaatataacac 33922690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 33185027 - 33185088
Alignment:
Q  89 tgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  33185027 tgaataatactataaagtataaacaaacatatatttaatataaaattaaatataacattcaa 33185088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 44288090 - 44288017
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  44288090 tgacaaattacataaataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaa 44288017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 19636148 - 19636072
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatat----ttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||    |||||| |||||||| ||||||||||||    
T  19636148 gacaaattacatgaataatacgataaagtataaacaaacttatatttaattaatataaaattaaatataacactcaa 19636072  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 26047777 - 26047810
Alignment:
Q  194 cagattaataaaattaaacgcatcacaagtagat 227  Q
    |||||||||||||||||||||||||| |||||||    
T  26047777 cagattaataaaattaaacgcatcactagtagat 26047810  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 36421972 - 36422101
Alignment:
Q  81 aaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaaccaagttagtttaattcatcaaaattaagt 180  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||  |||||||| ||| || |||||||||||| |  ||||||||     
T  36421972 aaattacatgaataatactataaagtataaataaacatatatttaatataaaattaaacataacactgaactaatttagtttaattctttgaaattaagc 36422071  T
Q  181 ataatggtgttagcagattaataaaattaa 210  Q
    ||| ||||||||| ||||||||||||||||    
T  36422072 atattggtgttagtagattaataaaattaa 36422101  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 36425488 - 36425597
Alignment:
Q  121 atttaatacaaaattaagtataacactcaaccaagttagtttaattcatcaaaattaagtataatggtgttagcagattaataaaattaaacgcatcaca 220  Q
    |||||||| ||||||||  |||| ||| ||| || |||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||| ||||||     
T  36425488 atttaatataaaattaaacataaaactgaactaatttagtttaattcttcaaaattaagcataatggttttagtagattaataaaattaaacacatcact 36425587  T
Q  221 agtagatgaa 230  Q
    ||||| ||||    
T  36425588 agtagttgaa 36425597  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 17315961 - 17316034
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  17315961 tgacaaattacgtaaataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaa 17316034  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 29264457 - 29264414
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatata 121  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  29264457 gacaaattacatgaataatactataaagtataaacaaacttata 29264414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 7154465 - 7154524
Alignment:
Q  91 aataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||| ||| ||||||||||||||||| ||||| |||||||  ||||||| ||||    
T  7154465 aataatactaaaaattataaacaaacatatatctaatataaaattagatataacattcaa 7154524  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 7893277 - 7893331
Alignment:
Q  91 aataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacac 146  Q
    |||||||||| ||||||||||||||| |||||||||||  ||||||| ||||||||    
T  7893277 aataatactataaagtataaacaaacttatatttaata-taaattaaatataacac 7893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 43631524 - 43631560
Alignment:
Q  89 tgaataatactacaaagtataaacaaacatatattta 125  Q
    |||||||||||| |||||||||||||||| |||||||    
T  43631524 tgaataatactataaagtataaacaaacacatattta 43631560  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 17120415 - 17120283
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaaccaagttagtttaattcatcaaaatta 177  Q
    ||||||||||| ||||||||||| |  ||||||| || ||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||||||||||    
T  17120415 gacaaattacacgaataatactaga--gtataaaaaatcatatatttaatataaaattaaatataacactcaactaatttaatttaattcatcaaaatta 17120318  T
Q  178 agtataatggtgttagcagattaataaaattaaac 212  Q
    || ||||||||| |||  |||||||||||||||||    
T  17120317 agcataatggtgatagtggattaataaaattaaac 17120283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 30484880 - 30484950
Alignment:
Q  79 acaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactca 149  Q
    |||||||||||||||||||||| ||||||| || | || ||||||||||| |||||||| |||||||||||    
T  30484880 acaaattacatgaataatactataaagtattaaaacacttatatttaatataaaattaaatataacactca 30484950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 41654540 - 41654467
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||||   ||||||| || ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  41654540 tgacaaattacgaaaataatagtataaattataaacaaacatatatctaatataaaattaaatataacattcaa 41654467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 5171042 - 5171092
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaata 128  Q
    ||||||| |||||||||||||||  |||||||||||||| |||||| ||||    
T  5171042 gacaaataacatgaataatactatgaagtataaacaaacgtatattaaata 5171092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 31203724 - 31203674
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaata 128  Q
    |||||||||||| |||||||||| ||  ||||||||||| |||||||||||    
T  31203724 gacaaattacataaataatactataagatataaacaaacttatatttaata 31203674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 47598898 - 47598866
Alignment:
Q  79 acaaattacatgaataatactacaaagtataaa 111  Q
    |||||||||||||||||||||||||| ||||||    
T  47598898 acaaattacatgaataatactacaaaatataaa 47598866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 30874635 - 30874699
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtata 142  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  30874635 gacaaattacatgaataatactataaagtataaacaaacatatatttaatataaaattaaatata 30874699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 1375114 - 1375041
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  1375114 tgacaaattacgtaaataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaa 1375041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 30212985 - 30213046
Alignment:
Q  89 tgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||| |||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||||||    
T  30212985 tgaatgatactataaagtgtaaacgaacatatatttaatataaaattaaatataacactcaa 30213046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 5124598 - 5124539
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaa 137  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  5124598 gacaaattacatgaataatactataaagtataaacaaacatatatttagtataaaattaa 5124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 14362560 - 14362487
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||||| || || |||||||| ||||||| ||||    
T  14362560 tgacaaattacgtaaataatactataaattataaacaaacatatatgtactataaaattaaatataacattcaa 14362487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 27707956 - 27707993
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27707956 gacaaattacatgaataatactataaagtataaacaaa 27707993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 22893078 - 22893142
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtata 142  Q
    |||||||||  | |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||    
T  22893078 gacaaattatgtaaataatactataaattataaacaaacatatatctaatataaaattaaatata 22893142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 25029692 - 25029648
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||    
T  25029692 gacaaattacatgaatattactataaagtataaacaaacttatat 25029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 14390733 - 14390805
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||  ||||||||||||||||| || || |||||||| ||||||| ||||    
T  14390733 tgacaaattacgtaaataatactataat-tataaacaaacatatatctattataaaattaaatataacattcaa 14390805  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 34559398 - 34559468
Alignment:
Q  80 caaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||| |||||||||| |||| |||||||||| ||||||||||| ||||| || ||||||||||||    
T  34559398 caaattacatcaataatactataaagcataaacaaacttatatttaatataaaatgaaatataacactcaa 34559468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 49600703 - 49600630
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  49600703 tgacaaattacgtaaataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaa 49600630  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 54857452 - 54857379
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||||| | |||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  54857452 tgacaaattacgtaaataatactataaattataaacaaacatatatctaatataaaattaaatataacattcaa 54857379  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 19238217 - 19238289
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    ||||||||| || |||||||||| ||| || |||||||||||||| ||||| |||||||| ||||||| ||||    
T  19238217 gacaaattatataaataatactataaattaaaaacaaacatatatctaatataaaattaaatataacattcaa 19238289  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 3125275 - 3125230
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||||||||||||||||||||  |||||||||||||| |||||    
T  3125275 tgacaaattacatgaataatactatgaagtataaacaaacttatat 3125230  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 8368083 - 8368010
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaa-catatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||  || ||||||||| ||||| |||| ||| | ||||||||||| |||||||| ||||||||||||    
T  8368083 gacaaattatttggataatactataaagtttaaaaaaaacttatatttaatataaaattaaatataacactcaa 8368010  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 54857115 - 54857078
Alignment:
Q  79 acaaattacatgaataatactacaaagtataaacaaac 116  Q
    ||||||||||||||||||| || |||||||||||||||    
T  54857115 acaaattacatgaataatagtataaagtataaacaaac 54857078  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 22696260 - 22696319
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaa 137  Q
    ||||| ||||||| ||||||||| |||||| |||||||| ||||||||||| ||||||||    
T  22696260 gacaagttacatgtataatactataaagtacaaacaaacttatatttaatataaaattaa 22696319  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 22023817 - 22023752
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataa 143  Q
    ||||||| |||||||||||| || ||||||||| |||||  |||||||||| |||||||| |||||    
T  22023817 gacaaataacatgaataataatataaagtataagcaaacgaatatttaatataaaattaattataa 22023752  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 24375623 - 24375578
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||    
T  24375623 tgacaaattacatgaataatactataaactataaacaaacttatat 24375578  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 19423968 - 19423924
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  19423968 gacaatttacatgaataatactataaagtataaacaaacttatat 19423924  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 19835425 - 19835384
Alignment:
Q  81 aaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  19835425 aaattacatgattaatactataaagtataaacaaacttatat 19835384  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 13726473 - 13726430
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||    
T  13726473 gacaaattacatgaataatactataaa-tataaacaaacttatat 13726430  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 15584643 - 15584712
Alignment:
Q  81 aaattacatgaataatactacaaagtataaacaaacatatatttaatacaaaattaagtataacactcaa 150  Q
    |||||||||||||||||| | ||||||||||||||  | ||||||||| |||||| |  |||||||||||    
T  15584643 aaattacatgaataataccataaagtataaacaaaactgtatttaatataaaatttaaaataacactcaa 15584712  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 31462466 - 31462511
Alignment:
Q  77 tgacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||| |||||||||||||||| || |||||||||||| |||||    
T  31462466 tgacaaactacatgaataatactataaggtataaacaaacttatat 31462511  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 10514 - 10558
Alignment:
Q  78 gacaaattacatgaataatactacaaagtataaacaaacatatat 122  Q
    ||||||| |||| |||||||||| ||||||||||||||| |||||    
T  10514 gacaaataacatcaataatactataaagtataaacaaacctatat 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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