View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13281_low_16 (Length: 285)
Name: NF13281_low_16
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 34867962 - 34867705
Alignment:
| Q |
11 |
cacagaaacggacactagacatgatatagacacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34867962 |
cacagaaacggacactagacatgatatagacacggacacgtcgacaccaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
34867863 |
T |
|
| Q |
111 |
tggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttaataagacaagaatcaggtttggatttggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
34867862 |
tggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttatggtttgtcaaggttgataagacaagaatcaagtttggatttggc |
34867763 |
T |
|
| Q |
211 |
aaatttgaaaccaaatctgagtcctgtatctaaaatgattttggggaattctgtgtaa |
268 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34867762 |
aaatttgaaaccaaatctaagtcctgtatctaaaatgattttggggaattctgcgtaa |
34867705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 9024248 - 9024178
Alignment:
| Q |
40 |
acacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
110 |
Q |
| |
|
|||||||||||||||||| || || |||| |||||||| || ||||||| |||||| |||||||||||| |
|
|
| T |
9024248 |
acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt |
9024178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 42874536 - 42874588
Alignment:
| Q |
67 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaa |
119 |
Q |
| |
|
|||| |||||||| || ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
42874536 |
tttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaa |
42874588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 23287415 - 23287351
Alignment:
| Q |
46 |
acacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
110 |
Q |
| |
|
|||||||||||| || ||| ||| ||||||||| || |||||||||||| | |||||||||||| |
|
|
| T |
23287415 |
acacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtgtcagtgt |
23287351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University