View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_17 (Length: 276)
Name: NF13281_low_17
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 28450343 - 28450592
Alignment:
| Q |
16 |
aaaaaccacgtgttagccattacattcacgagcattttttattaatgaaatcaacatgtgcaaattatgaatatacacagttagccattacattgcacct |
115 |
Q |
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| T |
28450343 |
aaaaacaacgtgttagccattacattcacgagcattttttattaatgaaatcaacatgtgcaaattatgaatatacacagttagccattacattgcacct |
28450442 |
T |
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| Q |
116 |
taattgactgnnnnnnntatttttgagaggcaagaatcctaggataataaaagtcaagtctttttccacgtagagaatgtatgcataataatttgaacaa |
215 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28450443 |
taattgactgaaaaatatatttttgagaggcaagaatcctaggataataaaagtcaagtctttttccacgtagagaatgtatgcataataatttgaacaa |
28450542 |
T |
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| Q |
216 |
gcaattgatccaaatttaattgactgagtagcctagcgtggtgtgttctt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28450543 |
gcaattgatccaaatttaattgactgagtagcctagcgtggtgtgttctt |
28450592 |
T |
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