View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_18 (Length: 268)
Name: NF13281_low_18
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 7558571 - 7558798
Alignment:
| Q |
19 |
cttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnn-tcgatgtgtaatgttaggttagctatctaattatgataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||| |
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| T |
7558571 |
cttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaattgatgtgtaatgttaggtcagctatctaattataataa |
7558670 |
T |
|
| Q |
118 |
aacatttacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtgaaaataagatctcttaaatcaccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7558671 |
aacatttacaggaaactaatataacaaattacaaccaaatattctattctatcatgatgtgtactagttttgtgaaaataagatctcttaaatcaccttt |
7558770 |
T |
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| Q |
218 |
agattgaaatatatatgcattccatgaa |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7558771 |
agattgaaatatatatgcattccatgaa |
7558798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 7593812 - 7593885
Alignment:
| Q |
172 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
245 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
7593812 |
tgatgtgtactagtttagtgaaaataagatctcttagatcacctttagattgcaatagatatgcattccatgaa |
7593885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 8993408 - 8993162
Alignment:
| Q |
19 |
cttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnn-tcgatgtgtaatgttaggttagctatctaattatgataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
8993408 |
cttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaatcaatgtgtaatgttaggtcagctatctaattatgataa |
8993309 |
T |
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| Q |
118 |
aacatt-------------------tacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtgaaaataa |
198 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
8993308 |
aacattccttcaaaaaaaaaacatttacaggaaactaatataacaaattacgaccaaatattctattctatcatgatgtgtactagttttgtgaaaataa |
8993209 |
T |
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| Q |
199 |
gatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
245 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8993208 |
gatctcttaaatcacctttagattgaaatatacatgcattccatgaa |
8993162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 8968255 - 8968182
Alignment:
| Q |
172 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
245 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
8968255 |
tgatgtgtactagtttagtgaaaataagatctcttaaatcacctttagattgcaatagatatgcattccatgaa |
8968182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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