View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_20 (Length: 254)
Name: NF13281_low_20
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 10637747 - 10637860
Alignment:
| Q |
24 |
tatcaaacaaaggtaagttaaaacttatgcaatctcctaaacctcaaaccccttgctcctttttcaaacagacagtatctcattttatccaaatgatttt |
123 |
Q |
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| T |
10637747 |
tatcaaacaaagctaagttaaaactcatgcaatctcctaaacctcaaaccccttcctcctttttcaaacagacagtatctcattttatccaaatgatttt |
10637846 |
T |
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| Q |
124 |
cctaatttcctcaa |
137 |
Q |
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| T |
10637847 |
cctaatttcctcaa |
10637860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 10637886 - 10637962
Alignment:
| Q |
158 |
catttaaaatagattcaagggaagaaattatacgtgagggagtcttaccgaaggaaagaaaatagaccggcgctgag |
234 |
Q |
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| T |
10637886 |
catttaaaatagattcaagggaagaaattatatgtgagggagtcttaccgaaggaaagaaaatagaccggcgttgag |
10637962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 7325662 - 7325725
Alignment:
| Q |
163 |
aaaatagattcaagggaagaaattatacgtgagggagtcttaccgaaggaaagaaaatagaccg |
226 |
Q |
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| T |
7325662 |
aaaatagattcaagggaagaaattatatatgaggaagccttaaagaatgaaagaaagtagaccg |
7325725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 4297662 - 4297609
Alignment:
| Q |
163 |
aaaatagattcaagggaagaaattatacgtgagggagtcttaccgaaggaaaga |
216 |
Q |
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| T |
4297662 |
aaaatagaatcaagggaagaaattatacctgacggagtcttgaagaaggaaaga |
4297609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 16672374 - 16672313
Alignment:
| Q |
163 |
aaaatagattcaagggaagaaattatacgtgagggagtcttaccgaaggaaagaaaatagac |
224 |
Q |
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|||||||| ||||||||||||||||||| ||| |||| ||| ||||||||||| |||||| |
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| T |
16672374 |
aaaatagaatcaagggaagaaattatacctgacggagccttgaagaaggaaagaacatagac |
16672313 |
T |
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