View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13281_low_21 (Length: 237)
Name: NF13281_low_21
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_21 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 13879371 - 13879590
Alignment:
| Q |
18 |
acaatgacatcatcatcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879371 |
acaatgacatcatcatcttcatcttcgtcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgt |
13879470 |
T |
|
| Q |
118 |
taacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879471 |
taacaaagtcgcagtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacaca |
13879570 |
T |
|
| Q |
218 |
gacatcaatctcttccttcc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13879571 |
gacatcaatctcttccttcc |
13879590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 13875167 - 13875373
Alignment:
| Q |
31 |
catcttcatcttcatcttcttccttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgca |
130 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
13875167 |
catcatcatcttcatcttcttccttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaa |
13875266 |
T |
|
| Q |
131 |
gtgcttccctttcaagttaagtgttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctct |
230 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13875267 |
atgcttccctttcaagtcgagtgtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctct |
13875366 |
T |
|
| Q |
231 |
tccttcc |
237 |
Q |
| |
|
||||||| |
|
|
| T |
13875367 |
tccttcc |
13875373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 4879 - 4851
Alignment:
| Q |
27 |
tcatcatcttcatcttcatcttcttcctt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4879 |
tcatcatcttcatcttcatcttcttcctt |
4851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 42827129 - 42827157
Alignment:
| Q |
27 |
tcatcatcttcatcttcatcttcttcctt |
55 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42827129 |
tcatcatcttcatcttcatcttcttcctt |
42827157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University