View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_3 (Length: 673)
Name: NF13281_low_3
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 16 - 659
Target Start/End: Complemental strand, 41785378 - 41784735
Alignment:
| Q |
16 |
tattcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgt |
115 |
Q |
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| T |
41785378 |
tattcgaggtgattatggtttgtttttgctccgcatttattcggtcaatggttgatgtctgatcctttatagttttctcttgatcagctatctggcctgt |
41785279 |
T |
|
| Q |
116 |
caactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785278 |
caactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaa |
41785179 |
T |
|
| Q |
216 |
ttgtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttttcctttaaaaaatttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785178 |
ttgtccaacgctagcctcatgtcattaacttcagcttttaaagccataatctcaattgaagctccattttcatcgctatcgttttcctttaaaaaatttg |
41785079 |
T |
|
| Q |
316 |
atatctcttcacctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttattttcattcatcagttgtttaatctcataatttgt |
415 |
Q |
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| T |
41785078 |
atatctcttcacctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttattttcattcatcagttgtttaatctcataatttgt |
41784979 |
T |
|
| Q |
416 |
atctcttaactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttcc |
515 |
Q |
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| T |
41784978 |
atctcttaactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaacctcgcaagaaaaccttctttctcttcc |
41784879 |
T |
|
| Q |
516 |
atcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaacc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41784878 |
atcatagtttgttcagtagatctcatttcagctaactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaacc |
41784779 |
T |
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| Q |
616 |
gcgcaagaaaaccctctttctcttccatcatagtatgttcggtt |
659 |
Q |
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| T |
41784778 |
gcgcaagaaaaccctctttctcttccatcatagtatgttcggtt |
41784735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 422 - 550
Target Start/End: Complemental strand, 41784846 - 41784718
Alignment:
| Q |
422 |
taactgctcttccaactcatttctctgattgatttgagtttccaattcgagttccatgttctttaatctcgcaagaaaaccttctttctcttccatcata |
521 |
Q |
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||||| ||||| ||||||| || |||| ||| |||| |||||||||| || |||||| | |||||| | |||||||||||| |||||||||||||||||| |
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| T |
41784846 |
taactcctcttgcaactcacttttctggttgctttgtgtttccaatttgaattccatttcctttaaccgcgcaagaaaaccctctttctcttccatcata |
41784747 |
T |
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| Q |
522 |
gtttgttcagtagatctcatttcagctaa |
550 |
Q |
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| T |
41784746 |
gtatgttcggttgatttcatttcggctaa |
41784718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 7e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 25 - 299
Target Start/End: Complemental strand, 10834588 - 10834316
Alignment:
| Q |
25 |
tgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtcaactttgt |
124 |
Q |
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| T |
10834588 |
tgattatggtttgtttttggtccacatttatttggtcaatggttggtgcttgatccattatagttatctct-gatcagctatctgggttgcaaactttgt |
10834490 |
T |
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| Q |
125 |
gttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaattgtccaac |
224 |
Q |
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| | ||| |||| | |||||| | |||||| ||||| | |||||||||||||||||| ||| || |||||| ||||| |||| ||||| || || || |
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| T |
10834489 |
ggttaaattttccacctttgccaggctttcagcatactgcttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagttatcgaaa |
10834391 |
T |
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| Q |
225 |
gctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttt |
299 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
10834390 |
tctagtcccatgtcattaacttcagcttttaaagccatgatctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
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