View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_5 (Length: 596)
Name: NF13281_low_5
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 43439858 - 43439282
Alignment:
| Q |
8 |
tagcaaaggacacagtacaaagttaaacttataattggtaatccaaaagaaagaaagaaaattatgaactctaaacaaattatggagttaggtcactctt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43439858 |
tagccaaggacacagtacaaagttaaacttataattggtaatccaaaagaaagaaagaaaattatgaactctaaacaaattatggagctaggtcactctt |
43439759 |
T |
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| Q |
108 |
caagtgaatctccattatcacttaaaaaatgtatataatatcagaaaattctaaattagttttgtagtaagatgaaatggaaaactaagatataatgaat |
207 |
Q |
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| T |
43439758 |
caagtgaatctccattatcacttaaaaaatgtatataatatcagaaaattctaaattagctttgtagtaagatgaaatggaaaactaagatataatgaat |
43439659 |
T |
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| Q |
208 |
ccatatcatcttacttattggcnnnnnnnnnnnnnnnnnnnnnntgtcacactcaagttatgaatcaggaaagcagcctaagatatgattagcttgattt |
307 |
Q |
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| T |
43439658 |
ccatatcatcttacttattggctataatatatgaatatatatattgtcacactcaagttatgaatcaggaaagcaacctaagatatgattagcttgattt |
43439559 |
T |
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| Q |
308 |
tgatgagattgtagctcatgttgactatgaggtatcatcaatggcatgctattttgatttgaaaagtaattagctgtatctgtaaattgatttg---aag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43439558 |
tgatgagattgtagctcatgttgactatgaggtatcatcaatggcatgctattttgatttgaaaagtaattagctgtatctgtaaattgatttgttgaag |
43439459 |
T |
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| Q |
405 |
tgaacaaattgtccaagcttttccaatcaattacttgtccattgttattattaatattattgctcctttcttcactgcaatattcttcaattgtgagtcc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439458 |
tgaacaaattgtccaagcttttccaatcaattacttgtccattgttattattaatattattgctcctttcttcactgcaatattcttcaattgtgagtcc |
43439359 |
T |
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| Q |
505 |
attgtgatgagtattttctttgattgcaaaacttgttgttggactatctaactgtggaagttcaatgagttgtttgt |
581 |
Q |
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| T |
43439358 |
attgtgatgagtattttctttgattgcaaaacttgttgttggactatctaactgtggaagttcaatgagttgtttgt |
43439282 |
T |
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