View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_6 (Length: 534)
Name: NF13281_low_6
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 113 - 513
Target Start/End: Original strand, 41071867 - 41072268
Alignment:
| Q |
113 |
atcacctaatagagaatatgataaacatggtggtgttcattgaaagagacaagatgatctgaactattagatctcagtttagtaagaatgacgaacacga |
212 |
Q |
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| T |
41071867 |
atcacctaatagagaatatgataaacatggtggtgtttattgaaagagacaagatgatctgaattattagatatcagctcagtaagaatgacgaacacaa |
41071966 |
T |
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| Q |
213 |
attacccatcaaaatgatatgatgaacataaatagtcaaatctttagcaatatagttttggatgagttccaaaagacttgcataaggatgaaattgcaga |
312 |
Q |
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| T |
41071967 |
attacccaccaaaatgatatgatgaacataaatagtcaaatctttagcaatatagttttggatgagtttcaaaagacttgcataaggatgaaattgcaga |
41072066 |
T |
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| Q |
313 |
gtgtccttcgtcaccaagtacaccacatgaagagattca-agtaacacaaactttctattgcacaccttccaacacaacctgatgccaaccaagagagcc |
411 |
Q |
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| T |
41072067 |
gtgtccttcgtcaccaagtacaccacatgaaaagattcagagtaacacaaactttctatagcacatcttccaacacaacctgatgccaagcaagagagcc |
41072166 |
T |
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| Q |
412 |
tgaatctcaacatgcaggatactagaaataccaacacctccaaagaaaccaagttaaaaattggcatggtgcttacggattagacatacattacgtgcct |
511 |
Q |
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| T |
41072167 |
tgaatctcaacatgtaggatactagaaataccaacaccgccaaagaaaccaagttaaaaattgtcatggtgcttacggattagacatacattacgtgcct |
41072266 |
T |
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| Q |
512 |
tt |
513 |
Q |
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| T |
41072267 |
tt |
41072268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41071756 - 41071807
Alignment:
| Q |
1 |
aattgaatgactttttatatattagggactaattaattattttggatacatt |
52 |
Q |
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| T |
41071756 |
aattgaatgactttttatatattagggactaattaattattttggatacatt |
41071807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 1871710 - 1871764
Alignment:
| Q |
251 |
aatctttagcaatatagttttggatgagttccaaaagacttgcataaggatgaaa |
305 |
Q |
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| T |
1871710 |
aatccttagcaagataattttggatgagttccaaaagatttgcataaagatgaaa |
1871764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 1862532 - 1862586
Alignment:
| Q |
251 |
aatctttagcaatatagttttggatgagttccaaaagacttgcataaggatgaaa |
305 |
Q |
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|||| ||||||| ||| ||||||||||||||||| ||| |||||||| ||||||| |
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| T |
1862532 |
aatccttagcaagataattttggatgagttccaagagatttgcataatgatgaaa |
1862586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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