View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_8 (Length: 406)
Name: NF13281_low_8
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_8 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 415118 - 415348
Alignment:
| Q |
18 |
actagggctactcattattatgccaattgcagtagtagcagacaaaggcttgattgaaggaaaaagatgacaatgaaagcatcttccacatccagtctgt |
117 |
Q |
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| T |
415118 |
actagggctactcattattatgccaattgcagtagtagcagacaaaggcttgattgaaggaaaaagatgacaatgaaagcatcttccacatccagtctgt |
415217 |
T |
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| Q |
118 |
cttcaaggaccagnnnnnnnngccaagaggacgaagacgaaggtgatcctttcaacctccgccccatggatgactttcactaaacaaaaaagaactccta |
217 |
Q |
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| T |
415218 |
cttcaaggaccag-aaacaaagctaagacgacgaagacgaaggcgatcctttcaacctccgccccatggatgactttcactaaacaaaaaagaactccta |
415316 |
T |
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| Q |
218 |
gagttcttctgctaaagaaaaatcatggtaac |
249 |
Q |
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| T |
415317 |
gagttcttctgctaaagaaaaatcatggtaac |
415348 |
T |
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Target: scaffold0001; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 415422 - 415493
Alignment:
| Q |
323 |
atcgaatctcagactcggagacaggaaccaacattcaaacaagtgatcaacagcagcagattgcaaaactct |
394 |
Q |
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| T |
415422 |
atcgaatctcagactcggagacaggaaccaacattcaaacaagtgatcaacagcagcagattgcaaaactct |
415493 |
T |
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