View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13281_low_9 (Length: 389)
Name: NF13281_low_9
Description: NF13281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13281_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 44164412 - 44164164
Alignment:
| Q |
18 |
acacaaaccatcgaggcctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgacca |
117 |
Q |
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| T |
44164412 |
acacaaaccatcgaggcctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgacca |
44164313 |
T |
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| Q |
118 |
ctttcaaaggtgccgggcttttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcata |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44164312 |
ctttcaaaggtgtcgggcttttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcata |
44164213 |
T |
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| Q |
218 |
agcggattttacctagaagcacccatcctcctccaacttccacctccaa |
266 |
Q |
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| T |
44164212 |
agcggattttaccgagaagcacccatcctcctccaacttccacctccaa |
44164164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 267 - 379
Target Start/End: Complemental strand, 44163496 - 44163384
Alignment:
| Q |
267 |
accgaattaataagtactattctacccacgaaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaaatag |
366 |
Q |
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| T |
44163496 |
accgaattaataagtactattctacccacgaaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaaatag |
44163397 |
T |
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| Q |
367 |
cgctactcctatg |
379 |
Q |
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| T |
44163396 |
cgctactcctatg |
44163384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 7954754 - 7954523
Alignment:
| Q |
34 |
cctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgaccactttcaaaggtgccgg |
133 |
Q |
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| T |
7954754 |
cctccaaaggaagggcgctcctaacagcaagattttccctcgttggaatacgatcaagcagcagcttccacgagaacgctaccactttcaaaggtgcagg |
7954655 |
T |
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| Q |
134 |
gcttttccacacttgtgaaaacactagtttctcctcttccctccataaatcttctatcaacaccaaacttaccaacttctcataagcggattttacctag |
233 |
Q |
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||| ||||||||||| | |||||| | ||||||| || ||||| ||||| || |||||||||| | | ||||||||||||| |||||||| ||| | |
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| T |
7954654 |
gctattccacacttgcgcaaacacaaccctctcctcatcactccacaaatcatcattcaacaccaagccttccaacttctcatacgcggatttaaccgtg |
7954555 |
T |
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| Q |
234 |
aagcacccatcctcctccaacttccacctcca |
265 |
Q |
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| T |
7954554 |
aaatacccttcatcctccaacctccacctcca |
7954523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 7953822 - 7953757
Alignment:
| Q |
297 |
aaactaatatatttgtgaccccatgaatttaatctccgatctaaaagatctaccaaaggttgccaa |
362 |
Q |
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||||||||| |||| | ||| |||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
7953822 |
aaactaataaatttattgccctatgaatttaatccccgatccaaaagatcaaccaaaggttgccaa |
7953757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 20161627 - 20161518
Alignment:
| Q |
33 |
gcctccaaaggaaggacattcctcacatgaagatttacctttgttggaagacgatcaagcaacaacttccaagagaacgcgaccactttcaaaggtgccg |
132 |
Q |
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|||||| | ||||| |||||||| ||||||||||| ||| ||||||||| | |||| ||||| || |||||||||| || || ||||||||||| |||| |
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| T |
20161627 |
gcctccgatggaagtacattcctaacatgaagattcacccttgttggaatatgatctagcaataatctccaagagaatgccacaactttcaaaggggccg |
20161528 |
T |
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| Q |
133 |
ggcttttcca |
142 |
Q |
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| |||||||| |
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| T |
20161527 |
gacttttcca |
20161518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 21942479 - 21942535
Alignment:
| Q |
86 |
atcaagcaacaacttccaagagaacgcgaccactttcaaaggtgccgggcttttcca |
142 |
Q |
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|||| ||||||||||||||||||| ||||||||||| | || |||||||||||||| |
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| T |
21942479 |
atcatgcaacaacttccaagagaaagcgaccactttagacggagccgggcttttcca |
21942535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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