View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13282_high_11 (Length: 384)

Name: NF13282_high_11
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13282_high_11
NF13282_high_11
[»] chr1 (3 HSPs)
chr1 (205-369)||(25493333-25493497)
chr1 (9-124)||(25493662-25493776)
chr1 (145-199)||(30735574-30735628)
[»] chr5 (1 HSPs)
chr5 (148-190)||(43550705-43550747)
[»] chr2 (3 HSPs)
chr2 (144-189)||(96173-96218)
chr2 (245-297)||(15253306-15253358)
chr2 (229-296)||(15256086-15256153)
[»] chr7 (1 HSPs)
chr7 (229-277)||(37381856-37381906)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 205 - 369
Target Start/End: Complemental strand, 25493497 - 25493333
Alignment:
Q  205 tatatataatgcatttaaggatggtatagtcaatttgatattatatatgaaactctataaaaactcgtgcatcatacaagttggagtctagttataataa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25493497 tatatataatgcatttaaggatggtatagtcaatttgatattatatatgacactctatagaaactcgtgcatcatacaagttggagtctagttataataa 25493398  T
Q  305 aatgcttttagtctataagctctaggtcaaccacccacggaccctcagtttcgatggttattttt 369  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  25493397 aatgcttttagtctacaagctctaggtcaaccacccacggaccctcacttttgatggttattttt 25493333  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 25493776 - 25493662
Alignment:
Q  9 gaataatataatagaaaatgaaaagagacgcaatgaattaaaatgtactcctattgtacatgaaagaagatttaaaagnnnnnnnatgcgcaatgaatta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  25493776 gaataatataatagaaaatgaaaagagacgcaatgaattaaaatgtactcctattgtacatgaaagaagatttaaaag-ttttttatgcgcaatgaatta 25493678  T
Q  109 caatttactcctcttt 124  Q
    |||||||||| |||||    
T  25493677 caatttactcgtcttt 25493662  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 30735574 - 30735628
Alignment:
Q  145 tgatattgaaaatgatgctaatttgatttcttcaataatatcattgtattattta 199  Q
    ||||||||||||||||  |||||| | || |||||||||||||||||| ||||||    
T  30735574 tgatattgaaaatgattttaatttaaattattcaataatatcattgtagtattta 30735628  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 43550705 - 43550747
Alignment:
Q  148 tattgaaaatgatgctaatttgatttcttcaataatatcattg 190  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  43550705 tattgaaaatgattctaatttgatttcttcaataataccattg 43550747  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 96218 - 96173
Alignment:
Q  144 atgatattgaaaatgatgctaatttgatttcttcaataatatcatt 189  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||    
T  96218 atgatattaaaaatgattctaatttgatttcttcaatagtatcatt 96173  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 15253358 - 15253306
Alignment:
Q  245 ttatatatgaaactctataaaaactcgtgcatcatacaagttggagtctagtt 297  Q
    ||||||||||||||||| |||||||||| ||   |||||||| ||||||||||    
T  15253358 ttatatatgaaactctacaaaaactcgtacaatgtacaagttagagtctagtt 15253306  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 15256153 - 15256086
Alignment:
Q  229 tatagtcaatttgata-ttatatatgaaactctataaaaactcgtgcatcatacaagttggagtctagt 296  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||| |||| |||  ||| |||||||||    
T  15256153 tatagtcattttgatacttatatatgaaactctat-aaaactcgtacatcgtacgggttagagtctagt 15256086  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 37381856 - 37381906
Alignment:
Q  229 tatagtcaatttgatatt--atatatgaaactctataaaaactcgtgcatc 277  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||||||||    
T  37381856 tatagtcaatttgatattttatatatgaaactctacaaaaacacgtgcatc 37381906  T

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