View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13282_high_12 (Length: 381)
Name: NF13282_high_12
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 47581341 - 47581694
Alignment:
| Q |
18 |
ttttgaatgtggtgcagagtataaaattattgagtggagatagcaacatgtatagaatataaaagtttgcgataaagactgaatcaagggaatgaaatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47581341 |
ttttgaatgtggtgcagagtataaaattattgagtggagatagcaacatgtgtagaatataaaagttttcgataaagactgaatcaagggaatgaaatga |
47581440 |
T |
|
| Q |
118 |
ataaat-acttagtgggttgggctatataatcataactattacattaattatcatttaaccaaatctttgtcataggatcattaaactaaatctttaaag |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47581441 |
ataaattacttagtgggttgggctatataatcataactattacattaattattatttaaccaaatctttgtcataggatcattaaactaaatctttaaag |
47581540 |
T |
|
| Q |
217 |
ttcacaaaagaaaacatatatatcaacgactaccaacgtcactaactcactatgcttgtcatatcatattatgagttcctagccccccttgtgaagaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47581541 |
ttcacaaaagaaaacatatatatcaacgactaccaacgtcactaactcactatgcttgtcatatcatattatgagttcctagccccccttgtgaagaatg |
47581640 |
T |
|
| Q |
317 |
gcttccttccatttgctgtttttacttgcaactttcttttccctctttgttcat |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47581641 |
gcttccttccatttgctgtttttacttgcaactttcttttccctctttgttcat |
47581694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University