View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_high_14 (Length: 357)
Name: NF13282_high_14
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 24125923 - 24126257
Alignment:
| Q |
6 |
agtgagaagaaggatatcttgtatgggatcagtggttctgtaaatccaggtgaagttttggcattgatgggtccctcaggaagtggaaagacaagtcttc |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24125923 |
agtgaggagaaggatatcttgtatgggatcagtggttctgtaaatccaggtgaagttttggcattgatgggtccctcaggaagtggaaagacaagtcttt |
24126022 |
T |
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| Q |
106 |
taaatctccttggaggaagaataagccagcccacaattggtggttctatcacttacaatgaccaatcatattccaagtttctcaaaagcaggttaaaatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24126023 |
taaatctccttggaggaagaataagccagcccacaattggtggttctatcacttacaatgaccaatcatattccaagtttctcaaaagcaggttaaaatc |
24126122 |
T |
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| Q |
206 |
caatgccagaatatggttactagcacatatacatttattacttaccaatttaccttgtgatcctgcgcatgtttgaattgacggtgaatttggtaaaatc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24126123 |
caatgccagaatatggttactagcacatatacatttattacttaccaatttaccttgtgatcctgcgcatgtttgaattgacggtgaatttggtaaaatc |
24126222 |
T |
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| Q |
306 |
acgatgacaccgtgattttattgaattgttctttt |
340 |
Q |
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| T |
24126223 |
acgatgacaccgtgattttattgaattgttctttt |
24126257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 24143930 - 24144137
Alignment:
| Q |
6 |
agtgagaagaaggatatcttgtatgggatcagtggttctgtaaatccaggtgaagttttggcattgatgggtccctcaggaagtggaaagacaagtcttc |
105 |
Q |
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| T |
24143930 |
agtgggaagaaagatatcttgaatggcataagtggttctgtaaatccaggtgaagttttggcaatgatgggtccatcaggaagtggaaagacaactcttt |
24144029 |
T |
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| Q |
106 |
taaatctccttggaggaagaataa---gccagcccacaattggtggttctatcacttacaatgaccaatcatattccaagtttctcaaaagcaggttaaa |
202 |
Q |
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| T |
24144030 |
taaaactccttggaggaaggctaaatcatcatcccacaaatggtggttctatcacttacaatgacaaaatatattccaagttccttaagagcaggtgaaa |
24144129 |
T |
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| Q |
203 |
atccaatg |
210 |
Q |
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|||||||| |
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| T |
24144130 |
atccaatg |
24144137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 26682522 - 26682577
Alignment:
| Q |
275 |
tgtttgaattgacggtgaatttggtaaaatcacgatgacaccgtgattttattgaa |
330 |
Q |
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| T |
26682522 |
tgtttgagttgatggtgaatttgacaaaatcacaataacaccgtgattttattgaa |
26682577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 43533403 - 43533223
Alignment:
| Q |
18 |
gatatcttgtatgggatcagtggttctgtaaatccaggtgaagttttggcattgatgggtccctcaggaagtggaaagacaagtcttctaaatctccttg |
117 |
Q |
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||||||||| | ||||||| ||||| |||||||||||| |||||||| ||||||||||||||||||||| |||| || || | | ||||||| |||| |
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| T |
43533403 |
gatatcttgaaagggatcactggttgtgtaaatccaggggaagttttagcattgatgggtccctcaggaggtggtaaaacttctttgttaaatctacttg |
43533304 |
T |
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| Q |
118 |
gaggaagaataagccagcccacaattggtggttctatcacttacaatgaccaatcatattccaagtttctcaaaagcaggt |
198 |
Q |
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||| || |||| || || | |||||||| ||||| ||||||||||| ||| ||||||||||||| || |||||||||| |
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| T |
43533303 |
gagctaggttaagtcaaccaaatattggtggctctataacttacaatgatcaaccatattccaagttcctaaaaagcaggt |
43533223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 39553895 - 39553839
Alignment:
| Q |
274 |
atgtttgaattgacggtgaatttggtaaaatcacgatgacaccgtgattttattgaa |
330 |
Q |
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||||||| |||||| |||| ||||||||||||||| |||||| |||||||| ||||| |
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| T |
39553895 |
atgtttggattgacagtgagtttggtaaaatcacggtgacactgtgattttgttgaa |
39553839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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