View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_high_18 (Length: 292)
Name: NF13282_high_18
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 35761578 - 35761849
Alignment:
| Q |
19 |
gagataggttgtttgatcatattgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctcca |
118 |
Q |
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| T |
35761578 |
gagataggttgtttgatcatattgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctcca |
35761677 |
T |
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| Q |
119 |
tgagcttgctcttctcatggaatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcct |
218 |
Q |
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| T |
35761678 |
tgagcttgctcttctcatggaatcaaaaaagagggttatcccaattttctatgatgttaaaccttcccagcttgttgttaaggacaatggtacttgtcct |
35761777 |
T |
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| Q |
219 |
gttaaagagcttcgaaggtttagtgctgcattagaggaagctaaattcactgttggattaacctttgcttct |
290 |
Q |
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| T |
35761778 |
gttaaagagcttcgaaggtttagtgctgcattagaggaagctaaattcactgttggattaacctttgattct |
35761849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 3387326 - 3387244
Alignment:
| Q |
66 |
gttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttctcatggaatcaaaaaa |
148 |
Q |
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| T |
3387326 |
gttggtgttgttgtcttctctcctaattattgcgactcttattattgtctccatgaactcgctcttctcatggagacaaaaaa |
3387244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 3393874 - 3393760
Alignment:
| Q |
34 |
atcatattgataaaggaattctaggttgcaaagttggtgttgctgtgttttctccaacttattgtgactcttatttttgtctccatgagcttgctcttct |
133 |
Q |
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| T |
3393874 |
atcatatcgataaagcaattattggttgtaaggttggtgttaccgtgttctctcctcgttattgtgactcttattattgtctccacgaactcgctcttct |
3393775 |
T |
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| Q |
134 |
catggaatcaaaaaa |
148 |
Q |
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| T |
3393774 |
gatggagacaaaaaa |
3393760 |
T |
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