View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_high_21 (Length: 269)
Name: NF13282_high_21
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_21 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 22760477 - 22760728
Alignment:
| Q |
18 |
atatgttagcacaaccacaagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaa |
117 |
Q |
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| T |
22760477 |
atatgttaccacaaccacaagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaa |
22760576 |
T |
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| Q |
118 |
ggactaaggattgcctccataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaa |
217 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760577 |
ggactaaggattgcctccgtaagtactggcatggtccaagaaaccaatgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaa |
22760676 |
T |
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| Q |
218 |
aaagttagatgaggtaccagctgaagatatatccaacaaaaatttgcattct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760677 |
aaagttagatgaggtaccagctgaagatatatccaacaaaaatttgcattct |
22760728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 48408565 - 48408794
Alignment:
| Q |
36 |
aagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcc |
135 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
48408565 |
aagcatgactataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcg |
48408664 |
T |
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| Q |
136 |
ataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtacc |
235 |
Q |
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| T |
48408665 |
gcaaggactgacatggtccaagaaaccaatgcagtatgacagattaaggctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtacc |
48408764 |
T |
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| Q |
236 |
agctgaagatatatccaacaaaaatttgca |
265 |
Q |
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| T |
48408765 |
agctgaagaaatatccaataaaaatttgca |
48408794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 48408026 - 48408255
Alignment:
| Q |
36 |
aagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcc |
135 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
48408026 |
aagcatgactataaatgacctagctaacagtacatgcatgtgaaaggtggtttaataagttctaacttttaaagaccaagaaggactaaggaatgcctcg |
48408125 |
T |
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| Q |
136 |
ataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtacc |
235 |
Q |
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||| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48408126 |
gcaaggactgacatggtccaagaaaccaatgcagtatgacagattaaggctcatatggatcctaaacctaaagtggtaagaaaaagttagatgaggtacc |
48408225 |
T |
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| Q |
236 |
agctgaagatatatccaacaaaaatttgca |
265 |
Q |
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| T |
48408226 |
agctgaagaaatatccaataaaaatttgca |
48408255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 42300217 - 42300464
Alignment:
| Q |
18 |
atatgttagcacaaccacaagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
42300217 |
atatgttagcacaaccacaagcatgaccataaatgacctagctaacagtacatgtatgtgaaaggtggtttaataagttttaacttttaaagaccaaaaa |
42300316 |
T |
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| Q |
118 |
ggactaaggattgcctccataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaa |
217 |
Q |
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| T |
42300317 |
gaactaaggattgcctcagcaagtactgacatggtccaagaaaccaatgcagtatgacagattaaggctcataaggatcctaaacttaaagtggtaagta |
42300416 |
T |
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| Q |
218 |
aaagttagatgaggtaccagctgaagatatatccaacaaaaatttgca |
265 |
Q |
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| T |
42300417 |
aaagttagatgaggtaccaactgaagaaatatccaacaaaaatttgca |
42300464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 18323034 - 18322903
Alignment:
| Q |
66 |
tacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctccataagtactgtcatggtccaagaaagcaat |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| |
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| T |
18323034 |
tacatgtatgtgaaaggtggtttaataagttctaacttttatagaccaaaaaggactaaggattgcctcgacaagtgctgtcatggtccaagaaacgaat |
18322935 |
T |
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| Q |
166 |
gcagcatgacagattaatgctcatatggatcc |
197 |
Q |
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| T |
18322934 |
gcagcatgtcagattaatgctcatatggatcc |
18322903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 18317750 - 18317710
Alignment:
| Q |
229 |
aggtaccagctgaagatatatccaacaaaaatttgcattct |
269 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |
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| T |
18317750 |
aggtgccaactgaagatatatccaacaaaaatttgcattct |
18317710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 42827105 - 42826869
Alignment:
| Q |
18 |
atatgttagcacaaccacaagcatgaccataaatgacctagctaacagtacatgta---------tgtgaaaggtggtttaataagttctaacttttat- |
107 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| | | |||||||||||||||||||||| |
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| T |
42827105 |
atatgttggcacaaccacctgcatgaccataaatgacctagctaacagtatatgtagtaaaaaaatgtgaaaagggatttaataagttctaacttttatt |
42827006 |
T |
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| Q |
108 |
---agaccaaaaaggactaaggattgcctccataagtactgtcatggtccaagaaagcaatgcagcatgacagattaatgctcatatggatcctaaacct |
204 |
Q |
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||||||| |||||||||||| ||| |||||||||||||| |||||| | |||||||||||| |||||||||||||||||| |
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| T |
42827005 |
taaagaccaagaaggactaagga---------------ctgacatggtccaagaaaccaatgccgtatgacagattaaggctcatatggatcctaaa--- |
42826924 |
T |
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| Q |
205 |
aaagtggtaagaaaaagttagatgaggtaccagctgaagatatatccaacaaaaattt |
262 |
Q |
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| T |
42826923 |
---gtggtaagaaaaagttagatgaggtaccagctgaagaaatatccaataaaaattt |
42826869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 28941938 - 28941994
Alignment:
| Q |
164 |
atgcagcatgacagattaatgctcatatggatcctaaacctaaagtggtaagaaaaa |
220 |
Q |
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|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
28941938 |
atgcagtatgacagattaaggttcatatggatcctaaacctaaagtggtaagaaaaa |
28941994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 1734 - 1694
Alignment:
| Q |
229 |
aggtaccagctgaagatatatccaacaaaaatttgcattct |
269 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||| |
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| T |
1734 |
aggtgccaactgaagatatatccaacaaaaatttgcattct |
1694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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