View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_high_26 (Length: 248)
Name: NF13282_high_26
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_26 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 59 - 248
Target Start/End: Complemental strand, 17805203 - 17805018
Alignment:
| Q |
59 |
agggaattatacatccatggactttgacatactcttttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaa |
158 |
Q |
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| T |
17805203 |
agggaattatacattcatggactttgacatactcttttgtattcgtcattcgaagttggaagtgtcgtgaacacaattcaacttgcgggagattattaaa |
17805104 |
T |
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| Q |
159 |
gttatagttagctagtcattagaagtgttagttaattagtaactagtggatatatgcctaggctttgatgtactcttttaattcatcttt |
248 |
Q |
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| T |
17805103 |
gttatagttagctagtcattagaagtgttagttaattcgtagctagtgg----atgcctaggctttgatgtactcttttaattcatcttt |
17805018 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 11815049 - 11815124
Alignment:
| Q |
92 |
cttttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatagtt |
167 |
Q |
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| T |
11815049 |
cttttgtattgttcatcccaagttggaagtgttgtaaacaccttccaacttgcgggagactattagagatatagtt |
11815124 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 39850449 - 39850352
Alignment:
| Q |
92 |
cttttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaa-cttgcgggagactattaaagttatagttagctagtcattagaagtgtta |
188 |
Q |
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| T |
39850449 |
cttttgtattggtcatcttaagttggaagtgtggtgaacacgttccaaacatgtgaaagtttattgaagttatagttagctagtcattagaagagtta |
39850352 |
T |
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Target: scaffold0655 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 571 - 625
Alignment:
| Q |
111 |
aagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatag |
165 |
Q |
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| T |
571 |
aagttggaagtgttgtgaacaccttccaacttgcgggggactattagagatatag |
625 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 23612224 - 23612296
Alignment:
| Q |
95 |
ttgtattcgtcattctaagttggaagtgtcgtgaacacatttcaacttgcgggagactattaaagttatagtt |
167 |
Q |
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| T |
23612224 |
ttgtattgttcatcctgagttggaagtgttgtgaacaccttccaacttgcgagggactattagagatatagtt |
23612296 |
T |
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