View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_high_27 (Length: 238)
Name: NF13282_high_27
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_high_27 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 31606706 - 31606927
Alignment:
| Q |
17 |
taactaaatgggttatcatgaaggaaaattccttttgatctttcaaacctgttcatgtgttcacatacccatatttttctgctaagtataagggcggtaa |
116 |
Q |
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| T |
31606706 |
taactaaatgggttatcatgaaggaaaattccttttgatctttcaaacttgctcatgtgttcacatacccatatttttctgctaagtataagggcggtaa |
31606805 |
T |
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| Q |
117 |
cgttaactttagccatgtcatatgaattgctacaaatcaagcatgatttggagaagagattatgttattaattaatcttcatggaattgatgaagaagaa |
216 |
Q |
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| T |
31606806 |
cgttaactttagccatgtcatatgaattgctacaaatcaagcatgatttggagaagagattatgttattaattaatcttcatgtaaataatgaggaagaa |
31606905 |
T |
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| Q |
217 |
aatagggtgaaagacaaacccc |
238 |
Q |
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| T |
31606906 |
aatagggtgaaagacaaacccc |
31606927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 31596592 - 31596662
Alignment:
| Q |
17 |
taactaaatgggttatcatgaaggaaaattccttttgatctttcaaacctgttcatgtgttcacataccca |
87 |
Q |
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| T |
31596592 |
taactaaatgggttatcttgtaagaaaattccttttgatctttcaaacttgatcaagtgttcacataccca |
31596662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31582491 - 31582563
Alignment:
| Q |
18 |
aactaaatgggttatcatgaaggaaaattccttttgatctttcaaacctgttcatgtgttcacatacccatat |
90 |
Q |
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| T |
31582491 |
aactaaatggattatcatgaaagaaaattcctcttgaactttgataattgatcatgtgttcacatacccatat |
31582563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 31568964 - 31569003
Alignment:
| Q |
20 |
ctaaatgggttatcatgaaggaaaattccttttgatcttt |
59 |
Q |
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| T |
31568964 |
ctaaatgggttttcatgaaagaaaattccttttgatcttt |
31569003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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