View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13282_low_1 (Length: 1115)
Name: NF13282_low_1
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 13879394 - 13878786
Alignment:
| Q |
1 |
agatgaagatgatgatgtcattgttcatcatgttgatgttgaatgatgatctcatctagatatgttttaggtttcacttaaaagagggagggatgaacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13879394 |
agatgaagatgatgatgtcattgttcatcatgttgatgttgaatgatgatctcatctagctatgttttaggtttcacttaaaagagggagggatgaacag |
13879295 |
T |
|
| Q |
101 |
agaagtagttttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttctgtt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13879294 |
agaagtagtattttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttctgtt |
13879195 |
T |
|
| Q |
201 |
tgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatagcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13879194 |
tgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatagcta |
13879095 |
T |
|
| Q |
301 |
gttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaattttgttatattgattgaagcgtacacacataactgcttgatgcattaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
13879094 |
gttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaattttgttatattgattgaagcgtacacacataactgcttgctgcattaaa |
13878995 |
T |
|
| Q |
401 |
tttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttttaattttcaggtgcatgct |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
13878994 |
tttagagctgttagaaaagatcattgaaaatcaagtgatattctgctgtggcaattggttttctctccatgtacgttcttt------------------t |
13878913 |
T |
|
| Q |
501 |
aaacaaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttctttttattcatgagctgagggctgagg |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13878912 |
aaaccaatatatggtggcgacaggacatacaaagttttaattagcaccaaaggtaatagatagataacttttcactttattcatgagctgagggctgagg |
13878813 |
T |
|
| Q |
601 |
cttttaatgtgtgaatgaatcagagta |
627 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
13878812 |
cttttaatgtgtgaatgaatcagagta |
13878786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 918 - 1099
Target Start/End: Complemental strand, 13878788 - 13878607
Alignment:
| Q |
918 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtt |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13878788 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggtg |
13878689 |
T |
|
| Q |
1018 |
agttatctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatag |
1099 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13878688 |
agttatctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatag |
13878607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 630 - 834
Target Start/End: Complemental strand, 13874629 - 13874427
Alignment:
| Q |
630 |
tatttttccttaccactacaagtgattaatggcctcattt-cgttgttaattgtgtttacaggaccaagtgatcactacacttgtgaagttcttagtaat |
728 |
Q |
| |
|
||||| ||||||| || |||||||| ||||||||||||| |||||||||||||||||| |||| |||||||| | ||||||||||||||||| ||||| |
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|
| T |
13874629 |
tatttgtccttacaacgtcaagtgatcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttgtgaagttcttggtaat |
13874530 |
T |
|
| Q |
729 |
tctcattcattctattg-ccataaattgcttgttagcttgtctaatcataacattgatagcatcgatcatttaacttttaactgttttacgggactatca |
827 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||||| ||||||| |||||||| | ||||||||| ||| || ||||||||||||||||| |
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|
| T |
13874529 |
tctcattcattctattgcccataaatattttgctggcttgtcaaatcatagcattgataac----atcatttaattttcaatggttttacgggactatca |
13874434 |
T |
|
| Q |
828 |
actgatc |
834 |
Q |
| |
|
| ||||| |
|
|
| T |
13874433 |
agtgatc |
13874427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 862 - 1064
Target Start/End: Complemental strand, 13884317 - 13884122
Alignment:
| Q |
862 |
tgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactgaagtttac |
961 |
Q |
| |
|
|||||||| || ||||||| ||||||||| ||||| ||||| ||||| | ||||| ||||||||||||||| ||||||||||||| ||||||||| | |
|
|
| T |
13884317 |
tgctgaatgcttctttctttatcatggtttaggttgatgattttgcaagatcaggt--acattcacaaatggggccattgctggaggcactgaagttagc |
13884220 |
T |
|
| Q |
962 |
aaataccaagaagaatctatcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaattttgcagtt |
1061 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| | ||||||||||| | | ||||||||||||||||| |||||||| ||| |||||| ||||| |
|
|
| T |
13884219 |
agataccaagaagaatcgatcgacagttcaaaa-gtaaaagagaagagtgtg----agttatctccaaatggaaactttgaagaggttaatttttcagtt |
13884125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13875183 - 13875082
Alignment:
| Q |
1 |
agatgaagatgatgatgtcattgttcatcatgttgatgttgaatgatgatctcatctag----atatgttttagg-tttcacttaaaagagggagggatg |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
13875183 |
agatgaagatgatgatgtcattgttcatcatgttgatgttgaatgatgatctcatctagctatatatgttttaggttttcacttaagagagtgagggatg |
13875084 |
T |
|
| Q |
96 |
aa |
97 |
Q |
| |
|
|| |
|
|
| T |
13875083 |
aa |
13875082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 862 - 1064
Target Start/End: Complemental strand, 16025007 - 16024811
Alignment:
| Q |
862 |
tgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactgaagtttac |
961 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||| || |||||||||||| | || | || ||| |||||||||| || |||||||||| |||||||| | | |
|
|
| T |
16025007 |
tgctgaatgtttttttctttatcatggtttagggtggtgattctgctagactatatg--catccacaaatggggccgttgctggaggcactgaagtgtgc |
16024910 |
T |
|
| Q |
962 |
aaataccaagaagaatcta-tcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaattttgcagt |
1060 |
Q |
| |
|
| ||||||||| ||||| | || ||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16024909 |
agataccaagaggaatcgaatccacagttcaaaa-gcgaaagagaagag----ggtgagttatctccaaatggagactttgaagaggataattttgcagt |
16024815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 855 - 1064
Target Start/End: Complemental strand, 13882516 - 13882313
Alignment:
| Q |
855 |
aatgtattgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactga |
954 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||| ||||| | |||||||| | |||| |||| |||||||| ||||| |
|
|
| T |
13882516 |
aatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagaccagtt--acattcacgattggggccatcgctggaggcactga |
13882419 |
T |
|
| Q |
955 |
agtttacaaataccaagaagaatc-tatcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaatt |
1053 |
Q |
| |
|
||||| || ||||||||||||||| ||| ||||||| |||||| ||||||||||| ||| |||||||| ||||||| |||||||| |||| | || |
|
|
| T |
13882418 |
agtttgcagataccaagaagaatcaaatcaacagttc-aaaagccaaagagaagagggag----agttatcttgaaatggaaactttgaagaggatagtt |
13882324 |
T |
|
| Q |
1054 |
ttgcagtttat |
1064 |
Q |
| |
|
|| |||||||| |
|
|
| T |
13882323 |
tttcagtttat |
13882313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 13874799 - 13874737
Alignment:
| Q |
359 |
tattgattgaagcgtacacacataactgcttgatgcattaaatttagagctgttagaaaagat |
421 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
13874799 |
tattgattgaagcgtacacacataattgcttgctgcattatacttagagctgttagaaaagat |
13874737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 643 - 736
Target Start/End: Complemental strand, 13884566 - 13884475
Alignment:
| Q |
643 |
cactacaagtgattaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
736 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
13884566 |
cactgcaagtaattaatggcttcatttccttgttaattgtgtttatggg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13884475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 864 - 1054
Target Start/End: Original strand, 40165746 - 40165930
Alignment:
| Q |
864 |
ctgaatttttgtttctttctcatggtttgggttggtgattctgcaacaccaggtgtacattcacaaatgggaccattgctggagggactgaagtttacaa |
963 |
Q |
| |
|
|||||| ||||||||||| ||||||||| || |||||||||||| | || | ||| ||| |||||||||| ||| |||||||| ||||| | | || |
|
|
| T |
40165746 |
ctgaatgtttgtttctttatcatggtttaggctggtgattctgctagacta--tgtgcatccacaaatggggtcatcgctggaggcactgacatgtgcag |
40165843 |
T |
|
| Q |
964 |
ataccaagaagaatc-tatcgacagttcaaaaagctaaagagaagagcgagggttagttatctccaaatggagactttgaataggacaattt |
1054 |
Q |
| |
|
||| ||||| ||||| ||||||||||| |||||| ||| |||| |||||| ||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
40165844 |
atatcaagaggaatcaaatcgacagttc-aaaagcgaaaaagaa----gagggtgagttatctccaaacggagactttgaagaggataattt |
40165930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 657 - 736
Target Start/End: Complemental strand, 13872260 - 13872183
Alignment:
| Q |
657 |
aatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacacttg-tgaagttcttagtaattctcattc |
736 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
13872260 |
aatggccccatttccttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtcattc |
13872183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
229 |
taccaattgctatcaatcaatattataaatatatgatta |
267 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 654 - 736
Target Start/End: Original strand, 12957643 - 12957723
Alignment:
| Q |
654 |
attaatggcctcatttcgttgttaattgtgtttacaggaccaagtgatcactacac-ttgtgaagttcttagtaattctcattc |
736 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || ||||||| ||||||| || |||||||||| |||||| |||||| |
|
|
| T |
12957643 |
attaatggcctcatttccttgttaattgtgtttatggg---aagtgattactacactttttgaagttcttggtaattgtcattc |
12957723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 854 - 914
Target Start/End: Complemental strand, 13872045 - 13871985
Alignment:
| Q |
854 |
taatgtattgctgaatttttgtttctttctcatggtttgggttggtgattctgcaacacca |
914 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||| |||| |
|
|
| T |
13872045 |
taatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagacca |
13871985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
106 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
187 |
Q |
| |
|
|||| |||||||| |||||||||||| | ||||||| || ||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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