View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_10 (Length: 446)
Name: NF13282_low_10
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 44623022 - 44622613
Alignment:
| Q |
19 |
tctacaatacctgcttcctcaaaaatatgaattaatttctacaatagaagataacttagtgaatttgtgactgattgaacaaattaattaacaaattggt |
118 |
Q |
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| T |
44623022 |
tctacaatacctgcttcctcaaaaatatgaattaatttctacaatagaagataacttagtgaatttgtgactgattgaacaaattaattaacaaattggt |
44622923 |
T |
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| Q |
119 |
tacttggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatgacaattgctattgcttacgtattgggtgga |
218 |
Q |
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| T |
44622922 |
tacttggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatgacaattgctattgcttacgtattgggtgga |
44622823 |
T |
|
| Q |
219 |
attgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttgtttcagtggtggttacattgattgctttgcttatctttggctttg |
318 |
Q |
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| T |
44622822 |
attgttcctctcattccttacatgttcattcgaaatgcatcagaggctgttcttgtttcagtggtggttacattgattgctttgcttatctttggctttg |
44622723 |
T |
|
| Q |
319 |
tcaagggatccttcaccggcaacaaaccaatcaggagtgctttggaaactgctctaattggtgccattgcctctgcggctgcttatggtttagcaaaggc |
418 |
Q |
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| T |
44622722 |
tcaagggatccttcaccggcaacaagccaatcaggagtgctttggaaactgctctaattggtgccattgcctctgcggctgcttatggtttggcaaaggc |
44622623 |
T |
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| Q |
419 |
tttccatcca |
428 |
Q |
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| T |
44622622 |
tttccatcca |
44622613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 93 - 428
Target Start/End: Complemental strand, 44634430 - 44634092
Alignment:
| Q |
93 |
ttgaacaaattaattaacaaattggttact---tggcgtggcaggtttgagttgggactagagaagccagatccgagaagagcattgtatagtgcaatga |
189 |
Q |
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| T |
44634430 |
ttgaacaaattaattaacaaattgcttactcgatggcatggcagatttgagctgggactagaaaagccagatccaatgagagcattgtgcagtgcaatga |
44634331 |
T |
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| Q |
190 |
caattgctattgcttacgtattgggtggaattgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttgtttcagtggtggttac |
289 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |
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| T |
44634330 |
caattgctattgcttacatattgggtggaattgttcctctcattccttacatgttcattccaaatgcatcagaggctgttcttttttcagtaatttttac |
44634231 |
T |
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| Q |
290 |
attgattgctttgcttatctttggctttgtcaagggatccttcaccggcaacaaaccaatcaggagtgctttggaaactgctctaattggtgccattgcc |
389 |
Q |
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| T |
44634230 |
attgattgctttgcttatctttggctttgtcaagggatgcttcaccggcagcaaacctatcaaaagtgctttcgaaactgctctcatcggcgccattgca |
44634131 |
T |
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| Q |
390 |
tctgcggctgcttatggtttagcaaaggctttccatcca |
428 |
Q |
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|| || ||||||| |||||| |||||||||||| ||||| |
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| T |
44634130 |
tccgcagctgcttttggtttggcaaaggctttcaatcca |
44634092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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