View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_11 (Length: 412)
Name: NF13282_low_11
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 5160015 - 5159628
Alignment:
| Q |
13 |
aatatcaaatttaaaaatcaattatgcaaatagaacaaatagattctttttggaagtaattcaatagaagaaattatgctaaaggatcatgaaagtttat |
112 |
Q |
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| T |
5160015 |
aatatcaaatttaaaaatcaattatgcaaatagaacaaatagattctttttggaagtaattcaatagaagaaattatgctaaaggatcatgaaagtttat |
5159916 |
T |
|
| Q |
113 |
ttgaagaggcatttgaataacaaagttttgttattcaaaatagttttaccaatcaccaaagtcatgaagttgtac---taaaatataaagaaattcgtac |
209 |
Q |
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| T |
5159915 |
ttgaagaggcatttgaataacaaagttttgttattcaaaatagctttaccaatcaccaaagtaatgaagttgtaccatcaaaatataaagtaattcgtac |
5159816 |
T |
|
| Q |
210 |
ctccaaatatacaagatggacatacattataactatgaccactttgtgcttnnnnnnncaattagtatttttattaaaaggagacagtgatgacgatcta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159815 |
ctccaaatatacaagatggacatacattataactatgaccactttgtgcttaaaaaaacaattagtatttttattaaaaggagacagtgatgacgatcta |
5159716 |
T |
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| Q |
310 |
tcttatgcaacttggtatttagaagctttggtatcatataaacatccaactaggcaataaaagggtatacttggattggtgttattga |
397 |
Q |
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| T |
5159715 |
tcttatgcaacttggtatttagaagctttggtatcatataaacatccaactaggcaataaaagggtatacttggattggtgttattga |
5159628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 5155962 - 5155916
Alignment:
| Q |
42 |
atagaacaaatagattctttttggaagtaattcaatagaagaaatta |
88 |
Q |
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| T |
5155962 |
atagaacaaataaattctttttggaagtatttcaatagaacaaatta |
5155916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 51942869 - 51942837
Alignment:
| Q |
14 |
atatcaaatttaaaaatcaattatgcaaataga |
46 |
Q |
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| T |
51942869 |
atatcaaatttaaaaatcaattatgcaaataga |
51942837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 47397708 - 47397740
Alignment:
| Q |
14 |
atatcaaatttaaaaatcaattatgcaaataga |
46 |
Q |
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| T |
47397708 |
atatcaaatttaaaaatcagttatgcaaataga |
47397740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 9693103 - 9693135
Alignment:
| Q |
14 |
atatcaaatttaaaaatcaattatgcaaataga |
46 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
9693103 |
atatcaaatttaaaaatcagttatgcaaataga |
9693135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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