View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_16 (Length: 355)
Name: NF13282_low_16
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_16 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 5391702 - 5391350
Alignment:
| Q |
3 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
102 |
Q |
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| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
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| Q |
103 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
202 |
Q |
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| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactacttt |
5391503 |
T |
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| Q |
203 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391502 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
5391403 |
T |
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| Q |
303 |
atatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtca |
355 |
Q |
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| T |
5391402 |
atatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtca |
5391350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 325
Target Start/End: Complemental strand, 5395511 - 5395191
Alignment:
| Q |
5 |
caaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaag |
104 |
Q |
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| T |
5395511 |
caaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaag |
5395412 |
T |
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| Q |
105 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||| ||||||||| | || |
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| T |
5395411 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctagg |
5395312 |
T |
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| Q |
205 |
atcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggat |
304 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5395311 |
atccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggat |
5395212 |
T |
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| Q |
305 |
atcttgctagaagaggttggt |
325 |
Q |
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|||||| |||||||||||||| |
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| T |
5395211 |
atcttgttagaagaggttggt |
5395191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 5401660 - 5401341
Alignment:
| Q |
3 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
102 |
Q |
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||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
5401660 |
atcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtga |
5401561 |
T |
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| Q |
103 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
202 |
Q |
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| T |
5401560 |
ggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgta |
5401461 |
T |
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| Q |
203 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
302 |
Q |
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||| |||| ||||| ||||||||||||| || ||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| |
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| T |
5401460 |
ggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaatttctattacacattagagg |
5401361 |
T |
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| Q |
303 |
atatcttgctagaagaggtt |
322 |
Q |
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|||||||| | ||||||||| |
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| T |
5401360 |
atatcttgttcgaagaggtt |
5401341 |
T |
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