View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_2 (Length: 1033)
Name: NF13282_low_2
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 1349727 - 1349092
Alignment:
| Q |
1 |
tgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1349727 |
tgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagt |
1349628 |
T |
|
| Q |
101 |
gaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1349627 |
gaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattg |
1349528 |
T |
|
| Q |
201 |
ccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttgatagaatttgacatgatacttgcttcaataaggtcctcaaattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1349527 |
ccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttgatagaatttgacatgatacttgcttcaataaggtcctcaaattc |
1349428 |
T |
|
| Q |
301 |
ttgttgaacatcatgtgtgcctcttatggattgcagcattaacttagctttttgatggtttttgctgttttggattatgctgtttggtgtttctgggagg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
1349427 |
ttgttgaacatcatgtgtgcctcttattgattgcagcattaacttagctttttgatggtttttgctgttttgaattatgctgtttggtgtttctggaagg |
1349328 |
T |
|
| Q |
401 |
aaaaatgctcctaaagtgaggattgtagctggaactgctgccatggctagagaaattcgccatccccaaccgtctttgatcttttctgtaccaaagttga |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1349327 |
aaaaatgctcctaaagtgaggattgtagctggaactgctgccatggctagagaaattcgccatccccaaccgtctttgatcttttctgtaccaaagttga |
1349228 |
T |
|
| Q |
501 |
ttaaatttgcagataaaacaccaattccaacacagagctggaagccaatgttaattgctcctctatatcttggtagtgccatttctgatagatataatgg |
600 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1349227 |
ttaaatttgctgatagaacaccgattccaacacaaagctggaagccaatgttgattgctcctctatatcttggaagtgccatttctgatagatataatgg |
1349128 |
T |
|
| Q |
601 |
cactgcctgcagaagaaaagaaacctttgatcaatc |
636 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |
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| T |
1349127 |
gactgcctgcagaagaaaagaaatttctgatcaatc |
1349092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 632 - 984
Target Start/End: Complemental strand, 1349055 - 1348713
Alignment:
| Q |
632 |
caatccaatgaattaaagagcttaataactatacattcactccataaacatgttttacaccgacataatgacgattagaagttcaaaattggatgagata |
731 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1349055 |
caatccaatgaat-aaagagcttaataactatacattcactccataaacatgttttacact----------cgattagaagttcaaaattggatgagata |
1348967 |
T |
|
| Q |
732 |
ttacctgaaaaatgagtttaaaagtgagagacattcctcatctcacaaatcggttttgtatggtttagttagactcaacccaaattttaagatgatatca |
831 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1348966 |
ttacctgaaaaatgagtttaaaagtgagagacattcctcatctcacaaatcggttttgtatggttgagttagactcaacccaaattttaagatgatatca |
1348867 |
T |
|
| Q |
832 |
taggttatctgaaatccgttgagctactcggcccgctatcgggccactcacgtcactctctaaatgtctgggcatgagggggtgttgagaagttcgacat |
931 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
1348866 |
taggttatctgaaatccgttgagctatccggcccgctatcgggccactcacgtcacactctaaatgtttaggcatgagggggtgttgagaagttcgacat |
1348767 |
T |
|
| Q |
932 |
ttgatgaaatattgtgtga-aagaaaattaagtgggaaacatctctcacctcta |
984 |
Q |
| |
|
||||||||||||||| || || |||||||| |||| ||||| |||||||||| |
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|
| T |
1348766 |
ttgatgaaatattgtacgataattaaattaagcgggagacatccctcacctcta |
1348713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 350 - 611
Target Start/End: Complemental strand, 1356332 - 1356071
Alignment:
| Q |
350 |
ttttgatggtttttgctgttttggattatgctgtttggtgtttctgggaggaaaaatgctcctaaagtgaggattgtagctggaactgctgccatggcta |
449 |
Q |
| |
|
|||||||||| || | || ||||||||| ||| || || |||||||| ||||||| ||| |||| || |||| | |||||||||||||||||||||| |
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|
| T |
1356332 |
ttttgatggtcttgggtggtttggattaggctattgggagtttctggtaggaaaagtgcacctagtgttaggaaagaggctggaactgctgccatggcta |
1356233 |
T |
|
| Q |
450 |
gagaaattcgccatccccaaccgtctttgatcttttctgtaccaaagttgattaaatttgcagataaaacaccaattccaacacagagctggaagccaat |
549 |
Q |
| |
|
| || | ||||| ||||||||| ||| ||||||||||| ||| ||||||||| ||| ||||| ||| ||||||| |||| | | ||||||||| | |
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|
| T |
1356232 |
gggatacgcgccaaccccaaccgccttcaatcttttctgttccatagttgattagattagcagacaaagcaccaataccaatgcttaattggaagccatt |
1356133 |
T |
|
| Q |
550 |
gttaattgctcctctatatcttggtagtgccatttctgatagatataatggcactgcctgca |
611 |
Q |
| |
|
||| ||||| |||||| |||| |||| |||||||||||| ||||||| || |||||||||| |
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|
| T |
1356132 |
gtttattgcccctctaaatctaggtaatgccatttctgagagatatagaggaactgcctgca |
1356071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 1356659 - 1356455
Alignment:
| Q |
26 |
agtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatgg |
125 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||| ||||||||| || ||| ||| || | |||| ||| || |||||||| ||||| ||||| | |
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|
| T |
1356659 |
agtttatctactatgaacattgatatgaacgttgaaccagtacctactatgcctgtcatgacagatgatagaagcgatgcactttctcctaacccaattg |
1356560 |
T |
|
| Q |
126 |
ttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattt |
225 |
Q |
| |
|
|| || || | || ||||| || | ||||||||||| ||||| | |||||||||||| ||||| ||||||||||| |||||||||||||||||| | |
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|
| T |
1356559 |
ttctgaaaagtaaaggggcatagaaagcgatgacattgatccctgtcacttgttggaaaaatggtattgctattgccattacaagttgaggtctatatct |
1356460 |
T |
|
| Q |
226 |
tcttt |
230 |
Q |
| |
|
||||| |
|
|
| T |
1356459 |
tcttt |
1356455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 760 - 831
Target Start/End: Original strand, 7252227 - 7252298
Alignment:
| Q |
760 |
agacattcctcatctcacaaatcggttttgtatggtttagttagactcaacccaaattttaagatgatatca |
831 |
Q |
| |
|
||||||||||||||| |||| | ||||||||| |||| |||||| ||||||||||||| ||||||| ||||| |
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|
| T |
7252227 |
agacattcctcatcttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatca |
7252298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 784 - 839
Target Start/End: Complemental strand, 43481401 - 43481346
Alignment:
| Q |
784 |
gttttgtatggtttagttagactcaacccaaattttaagatgatatcataggttat |
839 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
43481401 |
gttttataaggttgagttagactcaacccaaattttaatataatatcatagcttat |
43481346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 740 - 817
Target Start/End: Original strand, 27829858 - 27829935
Alignment:
| Q |
740 |
aaaatgagtttaaaagtgagagacattcctcatctcacaaatcggttttgtatggtttagttagactcaacccaaatt |
817 |
Q |
| |
|
|||||||||||| ||||| ||| ||| ||||| || | || ||||||||| |||||| | |||||||||||||||||| |
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|
| T |
27829858 |
aaaatgagtttataagtgggagtcatccctcaccttataagtcggttttgcatggttcatttagactcaacccaaatt |
27829935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 823
Target Start/End: Complemental strand, 30014211 - 30014156
Alignment:
| Q |
768 |
ctcatctcacaaatcggttttgtatggtttagttagactcaacccaaattttaaga |
823 |
Q |
| |
|
||||||| |||| ||||||||||| |||| |||||||| ||||| ||||||||||| |
|
|
| T |
30014211 |
ctcatcttacaagtcggttttgtagggttgagttagacccaacctaaattttaaga |
30014156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 782 - 825
Target Start/End: Complemental strand, 39079967 - 39079924
Alignment:
| Q |
782 |
cggttttgtatggtttagttagactcaacccaaattttaagatg |
825 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
39079967 |
cggttttgtaaggtttagttaggcccaacccaaattttaagatg |
39079924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 785 - 823
Target Start/End: Original strand, 1404841 - 1404879
Alignment:
| Q |
785 |
ttttgtatggtttagttagactcaacccaaattttaaga |
823 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
1404841 |
ttttgtatggttaagttaggctcaacccaaattttaaga |
1404879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 782 - 824
Target Start/End: Original strand, 2115534 - 2115576
Alignment:
| Q |
782 |
cggttttgtatggtttagttagactcaacccaaattttaagat |
824 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
2115534 |
cggttttgtagggttcaattagactcaacccaaattttaagat |
2115576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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