View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_20 (Length: 271)
Name: NF13282_low_20
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 16237426 - 16237182
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16237426 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
16237327 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatgctaccatcct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16237326 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatactaccatcct |
16237227 |
T |
|
| Q |
210 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16237226 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
16237182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 161093 - 161025
Alignment:
| Q |
176 |
ataagtcctccacaccccgcgatgctaccatccttacacgctccgtcagtattgatcttgacccaccca |
244 |
Q |
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||||||||||||||||||||||| ||| |||||||| | | |||||||||| ||||||||||||||| |
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| T |
161093 |
ataagtcctccacaccccgcgatactatcatccttataaacatcgtcagtattaatcttgacccaccca |
161025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 28575018 - 28575262
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28575018 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacatcggagaccttccaaaactccccatagctctgca |
28575117 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatgctaccatcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28575118 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatactaccatcct |
28575217 |
T |
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| Q |
210 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28575218 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
28575262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 38658303 - 38658365
Alignment:
| Q |
30 |
aatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaa |
92 |
Q |
| |
|
||||||| | |||||| ||||| | |||||||| |||||||||||||||||||||||||||| |
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|
| T |
38658303 |
aatccacttgtaattcaactgctataaaccccattcgtttcgcacaccggagaccttccaaaa |
38658365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 20633210 - 20633454
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633210 |
aatattcacaaccaccaaagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
20633309 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatgctaccatcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
20633310 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttccgaacctctgataagtcctccacaccccgcgatactaccatcct |
20633409 |
T |
|
| Q |
210 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
254 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
20633410 |
tacaagctccgtcagtattgatcttgacccacctaatcgctggtt |
20633454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 48823241 - 48823485
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48823241 |
aatattcacaaccaccaaagaatccatatttaattctactgcagtgaaccctgtacgttttgcacaccggagaccttccaaaactccccatagctctgca |
48823340 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatgctaccatcct |
209 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
48823341 |
ataaaagcatcactcttccctaaaaatttggagaaccccgctaaccactcgccttccgaacctctgataagtcctccacaccccgcgatactaccatcct |
48823440 |
T |
|
| Q |
210 |
tacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
254 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| ||||| |
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| T |
48823441 |
tacaagctccgtcagtattgatcttgacccatccaatcgctggtt |
48823485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 173
Target Start/End: Original strand, 38833308 - 38833471
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38833308 |
aatattcacaaccaccaaagaatccacatttaattctactgcagtgaaccccatacgttttgcacaccggagaccttccaaaactccccatagctctgca |
38833407 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctc |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
38833408 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttccgaacctc |
38833471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 18185491 - 18185400
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18185491 |
aatattcacaaccaccaaagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata |
18185400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 38835871 - 38835948
Alignment:
| Q |
177 |
taagtcctccacaccccgcgatgctaccatccttacacgctccgtcagtattgatcttgacccacccaatcggtggtt |
254 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||| ||||| |||||| |
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|
| T |
38835871 |
taagtcctccacaccccgcgatactaccatccttacaagcttcgttagtattgatcttgacccacgcaatcagtggtt |
38835948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 18568861 - 18568618
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgca |
109 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||||||| |||||||||| ||| |
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|
| T |
18568861 |
aatatttataaccaccaaagaatccacatttaagtatactgcagtgaaccccatatgttttgcacatcg-agaccttccaaaacttcccatagctccgca |
18568763 |
T |
|
| Q |
110 |
ataaaagcatcacacttccctaaaaatttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacac-cccgcgatgctaccatcc |
208 |
Q |
| |
|
| |||||| ||||||||| ||||||||| |||||||| ||||||| ||||||| | |||||| ||||| | ||||| | ||||| || |||||||| |
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|
| T |
18568762 |
acaaaagcgctacacttccccaaaaatttgaagaaccccactaaccattcgcctttcaaacctctaataagccatccacgctcccgcaatattaccatcc |
18568663 |
T |
|
| Q |
209 |
ttacacgctccgtcagtattgatcttgacccacccaatcggtggt |
253 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
18568662 |
ttacaagcatcgttagtattgatcttgacccacccaattggtggt |
18568618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 39180757 - 39180666
Alignment:
| Q |
10 |
aatattcacaaccaccagagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39180757 |
aatattcacaaccaccaaagaatccacatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata |
39180666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 5699476 - 5699423
Alignment:
| Q |
66 |
gtttcgcacaccggagaccttccaaaactccccatagctctgcaataaaagcat |
119 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
5699476 |
gtttcgcatatcggagaccttccaaaactccccacaactccgctataaaagcat |
5699423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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