View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_23 (Length: 267)
Name: NF13282_low_23
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_23 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 22761003 - 22760743
Alignment:
| Q |
7 |
tcgaagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaatgatttaattgtgagaaaatttaattttttctgtttcctagaattg |
106 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
22761003 |
tcgaagaatgtgagatttatacttttcttgacaaagatgtcaaatatgattaaatgatttaattgttagaaactttaattttttctgtttcctagaattg |
22760904 |
T |
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| Q |
107 |
caaaatcttcaatttagtggtcgggctgcggtcttgcattacgtttagaaaaacacaaaattcagcaaattacattcaggagctgaaagaaaggaaatac |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760903 |
caaaatcttcaatttagtggccgggctgcggtcttgcgttacgtttagaaaaacacaaaattcagcaaattacattcaggagctgaaagaaaggaaatac |
22760804 |
T |
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| Q |
207 |
atgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22760803 |
atgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
22760743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 1418 - 1679
Alignment:
| Q |
7 |
tcgaagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaatg-atttaattgtgagaaaatttaattttttctgtttcctagaatt |
105 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
1418 |
tcgaagaatgtgagatatatacttttcttgacaaagatgtcaaatatgattaaatggatttaattgtgagaaactttaattttttctgtt-cctagaatt |
1516 |
T |
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| Q |
106 |
gcaaaatcttcaatttagtggtcgggctgcggtcttgcattacgtttagaaaaacacaaaa-ttcagcaaattacattcaggagctgaaagaaaggaaat |
204 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
1517 |
gcaaaatcttcaatttagtggtcgggttgcggtcttgcgttacgttcagaaaaacgcaaaaattcaacaaattacattcaggagctgaatgaaaggaaat |
1616 |
T |
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| Q |
205 |
acatgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
267 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1617 |
acatgaaaaacttgataaatgatttatgatacttgattcatgtggatttggtaaagtcccttt |
1679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 18317434 - 18317695
Alignment:
| Q |
7 |
tcgaagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaatg-atttaattgtgagaaaatttaattttttctgtttcctagaatt |
105 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
18317434 |
tcgaagaatgtgagatatatacttttcttgacaaagatgtcaaatatgattaaatggatttaattgtgagaaactttaattttttctgtt-cctagaatt |
18317532 |
T |
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| Q |
106 |
gcaaaatcttcaatttagtggtcgggctgcggtcttgcattacgtttagaaaaacacaaaa-ttcagcaaattacattcaggagctgaaagaaaggaaat |
204 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||| |||| |||||||||||||||||||||| |||||||||| |
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| T |
18317533 |
gcaaaatcttcaatttagtggtcgggttgcggtcttgcgttacgttcagaaaaacgcaaaaattcaacaaattacattcaggagctgaatgaaaggaaat |
18317632 |
T |
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| Q |
205 |
acatgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
267 |
Q |
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| T |
18317633 |
acatgaaaaacttgataaatgatttatgatacttgattcatgtggatttggtaaagtcccttt |
18317695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 42300747 - 42300483
Alignment:
| Q |
7 |
tcgaagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaatg-atttaattgtgagaaaatttaatttt--ttctgtttcctagaa |
103 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| || |||||||||||| |
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| T |
42300747 |
tcgaagaatgtgaggtttatacttttcttgacaaagatgtcaaatatgcttaaatggatttaattgtgagaaactttaattttctttttgtttcctagaa |
42300648 |
T |
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| Q |
104 |
ttgcaaaatcttcaatttagtggtcgggctgcggtcttgcattacgtttagaaaaacacaaaa-ttcagcaaattacattcaggagctgaaagaaaggaa |
202 |
Q |
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||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
42300647 |
ttgcaaaatcttccattcagtggtcgggctgcagtcttgcattacgttcagaaaaacgcaaaaattcagcaaattacgttcatgagctgaaagaaaggaa |
42300548 |
T |
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| Q |
203 |
atacatgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42300547 |
atacatgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
42300483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 56537076 - 56537212
Alignment:
| Q |
10 |
aagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaatg-atttaattgtgagaaaatttaattttttctgtttcctagaattgca |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
56537076 |
aagaatgtgagatttatacttttcttgacaaagatgtcaaatatgattaaatggatttaattgtgagaaactttaattttttctgtttcctagaactgca |
56537175 |
T |
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| Q |
109 |
aaatcttcaatttagtggtcgggctgcggtcttgcat |
145 |
Q |
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|||||||| ||| |||||||||||||||||||||||| |
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| T |
56537176 |
aaatcttccattcagtggtcgggctgcggtcttgcat |
56537212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 267
Target Start/End: Complemental strand, 2085617 - 2085534
Alignment:
| Q |
184 |
aggagctgaaagaaaggaaatacatgaaaaacttgataaatggtttatgatacttgattcctgtggatttggtaaagtcccttt |
267 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||| |
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| T |
2085617 |
aggagctgaaagaaaggaaagacatgaaaaacttgataaatggtttatgagacttgattcgtgtggattcggtaatgtgccttt |
2085534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 42465432 - 42465561
Alignment:
| Q |
18 |
gagatttatacttttcttgacaaagatgtcaaatatgattaaatg-atttaattgtgagaaa-atttaattttttctgtttcctagaattgcaaaatctt |
115 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||| |||||| | | ||||||| ||| ||||||| ||||||||||| |
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| T |
42465432 |
gagatttatacttttcttgacaatgatgtcaaatataattagatgaatttaattgggagaaacgtgcatttttttcggttccctagaactgcaaaatctt |
42465531 |
T |
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| Q |
116 |
caatttagtggtcgggctgcggtcttgcat |
145 |
Q |
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| ||| |||||||||||||| |||||||| |
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| T |
42465532 |
ccattctgtggtcgggctgcgatcttgcat |
42465561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 48213560 - 48213492
Alignment:
| Q |
10 |
aagaatatgagatttatacttttcttgacaaagatgtcaaatatgattaaat-gatttaattgtgagaa |
77 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
48213560 |
aagaatgtgagatttatacttttcttgacaaagatgtcaaatatgattaaatggatttaactgtgagaa |
48213492 |
T |
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Back To:
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