View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_25 (Length: 267)
Name: NF13282_low_25
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 42224691 - 42224478
Alignment:
| Q |
9 |
aattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcgctaaatattttatcatatttaagannnnnnnnattgatttgtgc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
42224691 |
aattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaagcactaaatattttatcatatttaagattttttttattgatttgtgc |
42224592 |
T |
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| Q |
109 |
ctgtaatgccatgttggggcaagaattttctctcnnnnnnnnnctaggttaaagaagaatatggctcttgtatgctttgtgtacatttcccttgtttaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224591 |
ctgtaatgccatgttggggcaagaattttctctc-ttttttttctaggttaaagaagaatatggctcttgtatgctttgtgtacatttcccttgtttaat |
42224493 |
T |
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| Q |
209 |
tgaataattgtattg |
223 |
Q |
| |
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||||||||||||||| |
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| T |
42224492 |
tgaataattgtattg |
42224478 |
T |
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