View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_30 (Length: 208)
Name: NF13282_low_30
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_30 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 17802401 - 17802610
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccattttcgggaagaagctaaatttactactagaagaatgagaagaaaggaaaaagagttgat |
100 |
Q |
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| T |
17802401 |
ttgatcccaagttcagtcataagtttaccagcaagcaccattttcgggaagaagctaaatttactactagaagaatgagaagaaaggaaaaagggttgat |
17802500 |
T |
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| Q |
101 |
gtgaagaaagtgtgtgcaatcccttgccttaaatagaacttg--atacatcgaacatgccaaccaaatcaaattatggggtctactactttacatgtgcc |
198 |
Q |
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| T |
17802501 |
gtgaagaaagtgtgtgcaatcccttgccttaaatagaacttgatatacatcgaacatggcaaccaaatcaaactatggggtctactactttacatgtgcc |
17802600 |
T |
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| Q |
199 |
tccatgcata |
208 |
Q |
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|||||||||| |
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| T |
17802601 |
tccatgcata |
17802610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17870553 - 17870596
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccatttt |
44 |
Q |
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| T |
17870553 |
ttgatcccaagttcagtaataagtttaccagcaagcaccatttt |
17870596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17923402 - 17923486
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccattttcgggaagaagctaaatttactactagaagaatgagaagaaag |
86 |
Q |
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| T |
17923402 |
ttgatcccaagttcagtgataagtttaccagcaagcaccatttttggaaagatactaaatata-taatataagaaagagaagaaag |
17923486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17855038 - 17855081
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccatttt |
44 |
Q |
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| T |
17855038 |
ttgatcccaagttcagtgataagtttaccagcaagcaccatttt |
17855081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17692961 - 17693004
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccatttt |
44 |
Q |
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| T |
17692961 |
ttgatcccaatttcagtactaagtttaccagcaagcaccatttt |
17693004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 17821245 - 17821285
Alignment:
| Q |
4 |
atcccaagttcagtaataagtttaccagcaagcaccatttt |
44 |
Q |
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| T |
17821245 |
atcccaagttcagtgataagtttaccagctagcaccatttt |
17821285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17718305 - 17718347
Alignment:
| Q |
1 |
ttgatcccaagttcagtaataagtttaccagcaagcaccattt |
43 |
Q |
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| T |
17718305 |
ttgatcccaagttcagtactaagtttaccggcgagcaccattt |
17718347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 17846164 - 17846213
Alignment:
| Q |
4 |
atcccaagttcagtaataagtttaccagcaagcaccattttcgggaagaa |
53 |
Q |
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|||||||||||||| |||||||||||| | ||||||||||| || ||||| |
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| T |
17846164 |
atcccaagttcagtgataagtttaccaacgagcaccatttttggaaagaa |
17846213 |
T |
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