View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_31 (Length: 208)
Name: NF13282_low_31
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_31 |
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| [»] chr8 (4 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 33959824 - 33960042
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtactacgacnnnnnnnnnnnnnnnnnnnnnttcttctaggcta |
104 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33959824 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33959923 |
T |
|
| Q |
105 |
cttaaattgttaaatatctc---------------tacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
189 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959924 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33960023 |
T |
|
| Q |
190 |
ggaaaaatgcaagtgacac |
208 |
Q |
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||||||||||||||||||| |
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| T |
33960024 |
ggaaaaatgcaagtgacac |
33960042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 33975124 - 33975342
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtactacgacnnnnnnnnnnnnnnnnnnnnnttcttctaggcta |
104 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33975124 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33975223 |
T |
|
| Q |
105 |
cttaaattgttaaatatctc---------------tacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
189 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33975224 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33975323 |
T |
|
| Q |
190 |
ggaaaaatgcaagtgacac |
208 |
Q |
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||||||||||||||||||| |
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| T |
33975324 |
ggaaaaatgcaagtgacac |
33975342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 33952524 - 33952736
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtactacgacnnnnnnnnnnnnnnnnnnnnnttcttctaggcta |
104 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
33952524 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactatgac------tattattattatattttcttctaggcta |
33952617 |
T |
|
| Q |
105 |
cttaaattgttaaatatct---------------ctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
189 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952618 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttttaagtaactaattaacctctgctcatttacca |
33952717 |
T |
|
| Q |
190 |
ggaaaaatgcaagtgacac |
208 |
Q |
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||||||||||||||||||| |
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| T |
33952718 |
ggaaaaatgcaagtgacac |
33952736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 33992044 - 33992255
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtactacgacnnnnnnnnnnnnnnnnnnnnnttcttctaggcta |
104 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33992044 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgac------tattattattatattttcttctaggcta |
33992137 |
T |
|
| Q |
105 |
cttaaattgttaaatatct---------------ctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
189 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
33992138 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatc-tttaagtaattaattaacctcttctcatttacca |
33992236 |
T |
|
| Q |
190 |
ggaaaaatgcaagtgacac |
208 |
Q |
| |
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||||||||||||||||||| |
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| T |
33992237 |
ggaaaaatgcaagtgacac |
33992255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 8278105 - 8278020
Alignment:
| Q |
122 |
ctctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaaatgcaagtgacac |
208 |
Q |
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||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| | |||| || ||||||||| |
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| T |
8278105 |
ctctacataaatcctgtgaaataatttcttatcttt-aagtaactaattaacctctgctcatttacctgaaaaagtgaaagtgacac |
8278020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 8278231 - 8278170
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtacta |
66 |
Q |
| |
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||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
8278231 |
atggaaatcatcaataaattaggcctcatgaatttggctaatgtgataataccaaggtacta |
8278170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 2891615 - 2891573
Alignment:
| Q |
166 |
taattaacctctgctcatttaccaggaaaaatgcaagtgacac |
208 |
Q |
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|||||| ||| |||||||||||||| ||||||||||||||||| |
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| T |
2891615 |
taattaccctttgctcatttaccagaaaaaatgcaagtgacac |
2891573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 12115 - 12174
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggtatcatgaatttggctaatgtcataataccaaggtac |
64 |
Q |
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|
||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
12115 |
atggaaatcataaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac |
12174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 12246 - 12284
Alignment:
| Q |
167 |
aattaacctctgctcatttaccaggaaaaatgcaagtga |
205 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
12246 |
aattaacctctgctcatatactaggaaaaatgcaagtga |
12284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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