View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13282_low_4 (Length: 843)
Name: NF13282_low_4
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_4 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 787; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 5 - 843
Target Start/End: Original strand, 15845878 - 15846716
Alignment:
| Q |
5 |
ggtagattatactagttagatattaagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtattatctca |
104 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15845878 |
ggtatattgtactagttagatattaagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtattatctca |
15845977 |
T |
|
| Q |
105 |
ttgtgaatatgaatgaaaaataatatgctaaagattaatagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgctt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15845978 |
ttgtgaatatgaatgaaaaataatatgctaaagattaatagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgctt |
15846077 |
T |
|
| Q |
205 |
ctttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaaca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846078 |
ctttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaaca |
15846177 |
T |
|
| Q |
305 |
tcaagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatga |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15846178 |
tcaagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtataa |
15846277 |
T |
|
| Q |
405 |
agtaaatcatattataagacgaaaaattagaaattcaattacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatg |
504 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846278 |
agtaaatcatattataagaagaaaatttagaaattcaattacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatg |
15846377 |
T |
|
| Q |
505 |
ccggattgactatctttcgatgtttagcccatttctcaccctcttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttggg |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
15846378 |
ccggattgactatctttcgatgtttagcccatttctcaccctcttggtgtgctataccaacaccgaaatacttggaaatggagatgaactttgatttggg |
15846477 |
T |
|
| Q |
605 |
aaagtcctccatcctgttaaagatttccttaatttgatcagggtctgtgatgataacatttggtgttgcaccgtcccataaaaaggaattctttcctgca |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846478 |
gaagtcctccatcctgttaaagatttccttaatttgatcagggtctgtgatgataacacttggtgttgcaccgtcccataaaaaggaattctttcctgca |
15846577 |
T |
|
| Q |
705 |
tatatatcctttatgttagaacaacaaattaaacccgactccaaagtaaacagatagataaacacacaagaatgcaatgcttgattacaaagttctacca |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
15846578 |
tatatatcctttatgttagaacaacaaattaaacccgactccaaagtaaacagatagataaacgcgcaagaatgcaatgcttgattacaaagttctacca |
15846677 |
T |
|
| Q |
805 |
attgtgtctacgtctcagagagcaatgtggcagttgtaa |
843 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15846678 |
attgtgtttacgtctcagagagcaatgtggcagttgtaa |
15846716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 148 - 843
Target Start/End: Original strand, 15860210 - 15860897
Alignment:
| Q |
148 |
ataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagctgctt |
247 |
Q |
| |
|
||||| |||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
15860210 |
atacccccataatggattgttcgtgtgtcgccctgtcatcaaaagaaatccctgcttctttagaagttgaaatagttttgttccttctgcgtagctgctt |
15860309 |
T |
|
| Q |
248 |
ccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttccatt |
347 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15860310 |
ccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaatctcacatgttccatctgatgacaataatcccttccatt |
15860409 |
T |
|
| Q |
348 |
tgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa-ttac |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| || |||| |
|
|
| T |
15860410 |
tgcttatcatttcattgcaactgtgagaaaatgcaggcagcataacctatagtttgaagtaaatcatattataagaataaaaattagaaatttaatttac |
15860509 |
T |
|
| Q |
447 |
aaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctcaccct |
546 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||||||||||| ||||||||| |||||| | ||||| | ||||||||||||||||| ||||| |
|
|
| T |
15860510 |
aaaattgcaagaattaattaaagcaataaccttactttcaatttttctaggtggaatgctggattggcgatcttcctatgtttagcccatttcttaccct |
15860609 |
T |
|
| Q |
547 |
cttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttgatcagg |
646 |
Q |
| |
|
| || | | ||||||||| |||||||||| |||||||| | ||| |||||| ||||| || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
15860610 |
catgatctagtataccaacgttcaaatacttggcgatggatcttagttttggtttggggaagtcatcaatcttgttaaagacatccttaatttgatcagg |
15860709 |
T |
|
| Q |
647 |
gtctgtgatgataacatttggtgttgcaccgtcccataaaaaggaattctttcctgcatatatatcctttatgttagaacaacaaattaaacccgactcc |
746 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
15860710 |
gtctgtgatgataacccttggtattgtaccttcccataaaaaggaattctttcctgc----atatcctttatgttagaacaac-----aaacccaactct |
15860800 |
T |
|
| Q |
747 |
aaagtaaacagatagataaacacacaagaatgcaatgcttgattacaaagttctaccaattgtgtctacgtctcagagagcaatgtggcagttgtaa |
843 |
Q |
| |
|
|||| ||||||||| || || || | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15860801 |
aaagcaaacagataaattaaagcataggaatacaatgcttgattacaaagttctaccaattgtgtctacgtctctgagagcaatgtggcagttgtaa |
15860897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 154 - 815
Target Start/End: Original strand, 15852855 - 15853507
Alignment:
| Q |
154 |
ccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagctgcttccaaat |
253 |
Q |
| |
|
|||||||||| ||||||| || || || ||||||||| || |||||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
15852855 |
ccataatggagtgttcgtttgtagttctttcatcaaaagaactccctgcttcttcaaaagttgaaatagttttgttccttctgcgtagctgcttccaaat |
15852954 |
T |
|
| Q |
254 |
gctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttccatttgctta |
353 |
Q |
| |
|
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
15852955 |
gctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatctcacatgttccatctgatgacaataaaccattccatttgctta |
15853054 |
T |
|
| Q |
354 |
tcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa-ttacaaaatt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||||||||| || ||||||| |
|
|
| T |
15853055 |
tcatttcattgcaactgtgagaaaatgcaggcagcataccctatagtatgaagtaaatcatataataagaagaaaagttagaaattcaatttgcaaaatt |
15853154 |
T |
|
| Q |
453 |
gaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctcaccctcttggt |
552 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
15853155 |
gaaataattagcta-agtaataaccttactttcaatttttctatatggaatgccggattgactatctttcgatgtgtagcccatttctcaccctcatggt |
15853253 |
T |
|
| Q |
553 |
gtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttgatcagggtctgt |
652 |
Q |
| |
|
|| |||||||||||| |||||| || ||||| ||| |||||| |||||| |||||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15853254 |
gtactataccaacactcaaatacaaggcaatgggtcttaacttttgtttggggaagtcctcagtcttgttaaagacatccttaatttgatcagggtctgt |
15853353 |
T |
|
| Q |
653 |
gatgataacatttggtgttgcaccgtcccataaaaaggaattctttcctgcatatatatcctttatgttagaacaacaaattaaacccgactccaaagta |
752 |
Q |
| |
|
||||||||| ||||| ||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| | |||||| | || ||||| |
|
|
| T |
15853354 |
gatgataacccttggtattgtaccttcccataaaaaggaattatttcctgc----atatcctttatgttagaacagc-----aaacccaattctaaagtg |
15853444 |
T |
|
| Q |
753 |
aacagatagataaacacacaagaatgcaatgcttgattacaaagttctaccaattgtgtctac |
815 |
Q |
| |
|
|||||||| |||||| |||| |||| ||||| |||||||| ||||| ||||||||| |||| |
|
|
| T |
15853445 |
aacagataaataaacgcacatgaatacaatgattgattacggagttcggccaattgtgcctac |
15853507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 143 - 843
Target Start/End: Original strand, 15866592 - 15867284
Alignment:
| Q |
143 |
tagtgataccgccataatggaatgttcgtgcgtggtgctgtcatcaaaataaatccctgcttctttagaagttgaaatatttttgctccttctgcatagc |
242 |
Q |
| |
|
|||| ||||| |||||||||| ||||||| || | |||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| |
|
|
| T |
15866592 |
tagtcatacccccataatggattgttcgtttgtcgccctgtcatcaaaagaaatccctgcttctttagaagttgaaatagtttttctccttctgcgtagc |
15866691 |
T |
|
| Q |
243 |
tgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatccctt |
342 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |
|
|
| T |
15866692 |
tgcttccaaatgccgtccgagaaattacatcacaggtaaaattctgaaggaaaggccaaacatcaacctcacatgttccatctgatgacaatagttcctt |
15866791 |
T |
|
| Q |
343 |
ccatttgcttatcatttcattgcaactgtgagaaaatgcaggcagcataccctacagtatgaagtaaatcatattataagacgaaaaattagaaattcaa |
442 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
15866792 |
ccatttactaatcatttcattgcaactgtaagaaaatgcaggtagcataccctatagtttgaagtaaatcatattataagaataaaaattagaaatttaa |
15866891 |
T |
|
| Q |
443 |
-ttacaaaattgaaataattagctagagcaataaccttactttcaatttttctatgtggaatgccggattgactatctttcgatgtttagcccatttctc |
541 |
Q |
| |
|
|| |||||||| || ||||| || |||||||||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||| |
|
|
| T |
15866892 |
tttgcaaaattgcaagaatta-ttaaagcaataaccttactttcaatttttctaggtggaatgccggattggcgatcttcctatgtttagcccatttctt |
15866990 |
T |
|
| Q |
542 |
accctcttggtgtgctataccaacaccgaaatacttggaaatggatctgaactttaatttgggaaagtcctccatcctgttaaagatttccttaatttga |
641 |
Q |
| |
|
|||||| | ||| ||||||||| | |||||||||| |||||| | || || |||||| |||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
15866991 |
accctcataatgtattataccaacgctcaaatacttggcgatggattttaatattggtttggggaagtcctcgatcttgttaaagacttccttaatttga |
15867090 |
T |
|
| Q |
642 |
tcagggtctgtgatgataacatttggtgttgcaccgtcccataaaaaggaattctttcctgcatatatatcctttatgttagaacaacaaattaaacccg |
741 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||| |||||||||||||| || |||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
15867091 |
tcagggtctgcgatgataactcttggtgttgtaccttcccataaaaaggatttttttcctgc----atatcctttatgttagaaccgc-----aaaccca |
15867181 |
T |
|
| Q |
742 |
actccaaagtaaacagatagataaa--cacacaagaatgcaatgcttgattacaaagttctaccaattgtgtctacgtctcagagagcaatgtggcagtt |
839 |
Q |
| |
|
|||| ||| |||||||||| ||||| | |||| ||| |||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
15867182 |
actctaaa-taaacagataaataaaggcgcacacaaatacaattcttgattacaaagttctaccaattgcttctgtgtctgtgagagcaatgtggcagtt |
15867280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 200 - 369
Target Start/End: Complemental strand, 30483007 - 30482838
Alignment:
| Q |
200 |
tgcttctttagaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggcc |
299 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||| |||| || |||||||||||||||| || ||| ||||||| | |||||| |||| | |||||| |
|
|
| T |
30483007 |
tgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttgaatggaaggcc |
30482908 |
T |
|
| Q |
300 |
aaacatcaagctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
369 |
Q |
| |
|
| ||||||| ||||||| ||||||| |||| || | ||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
30482907 |
atacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaact |
30482838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 210 - 333
Target Start/End: Complemental strand, 30475394 - 30475271
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || ||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||| | |
|
|
| T |
30475394 |
gaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttgaaggaaaggccaaacatccaa |
30475295 |
T |
|
| Q |
310 |
ctcacatgttccatctgatgacaa |
333 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
30475294 |
ttcacatgatccatctgatgacaa |
30475271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 30394229 - 30394070
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||||||| |||| || |||||||| || |||| |||||| |||||| | ||||||||| ||| ||||||| || || | |
|
|
| T |
30394229 |
gaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcacttgccaaattctgcagggaaggccatacgtctat |
30394130 |
T |
|
| Q |
310 |
ctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
369 |
Q |
| |
|
||||||| ||||||||| ||||| | | ||| ||||||||| ||||| ||||||||||| |
|
|
| T |
30394129 |
ttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaact |
30394070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 30384100 - 30383941
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| ||||||||||| |||| |||||| |||||| | |||||| || ||| ||||||| | ||| | |
|
|
| T |
30384100 |
gaagttgaaatattctttttccttcttcatagctacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctat |
30384001 |
T |
|
| Q |
310 |
ctcacatgttccatctgatgacaataatcccttccatttgcttatcatttcattgcaact |
369 |
Q |
| |
|
||||||| ||||||||| ||||| | | || ||||||| | |||| ||||||||||| |
|
|
| T |
30384000 |
ttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaact |
30383941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 210 - 333
Target Start/End: Complemental strand, 30436523 - 30436400
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || |||||||| |||| || |||||| | ||||| || |||||| |||||||||||||| || || | |
|
|
| T |
30436523 |
gaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttgaaggaaaggccatacgtccat |
30436424 |
T |
|
| Q |
310 |
ctcacatgttccatctgatgacaa |
333 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
30436423 |
ttcacatgatccatctgacgacaa |
30436400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 210 - 333
Target Start/End: Complemental strand, 30468265 - 30468142
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || |||||||| |||| || |||||| ||||||| || ||||| |||||||||||||| || || | |
|
|
| T |
30468265 |
gaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttgaaggaaaggccatacgtccat |
30468166 |
T |
|
| Q |
310 |
ctcacatgttccatctgatgacaa |
333 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
30468165 |
ttcacatgatccatctgacgacaa |
30468142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 327
Target Start/End: Complemental strand, 30424272 - 30424155
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||| ||| |||| || ||||||||||| | || |||||| ||||||| | |||||| |||||||||||||| || || | |
|
|
| T |
30424272 |
gaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtccat |
30424173 |
T |
|
| Q |
310 |
ctcacatgttccatctga |
327 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
30424172 |
ttcacatgatccatctga |
30424155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 46830919 - 46830989
Alignment:
| Q |
28 |
taagtagttattgtctaattgttgtagttatcttattgtgtgcatgtattagtatatctaaggattgtatt |
98 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||||| |
|
|
| T |
46830919 |
taagtagttattgtataactgttgtagttatcttattgtgtgtatgtattattatatataatgattgtatt |
46830989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 41628343 - 41628459
Alignment:
| Q |
210 |
gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag |
309 |
Q |
| |
|
|||||||||||||| || ||||||| |||| || ||||| |||| ||||| |||||| ||||||| | ||||||||||||| ||||||| | ||| | |
|
|
| T |
41628343 |
gaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatatctat |
41628442 |
T |
|
| Q |
310 |
ctcacatgttccatctg |
326 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
41628443 |
ttcacatgatccatctg |
41628459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 809
Target Start/End: Original strand, 3039549 - 3039611
Alignment:
| Q |
747 |
aaagtaaacagatagataaacacacaagaatgcaatgcttgattacaaagttctaccaattgt |
809 |
Q |
| |
|
|||||||||||||| ||||| | |||||||| ||||| |||||||| || ||| ||||||||| |
|
|
| T |
3039549 |
aaagtaaacagatatataaataaacaagaatacaatgattgattacgaaattcaaccaattgt |
3039611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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