View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13282_low_5 (Length: 630)

Name: NF13282_low_5
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13282_low_5
NF13282_low_5
[»] chr1 (7 HSPs)
chr1 (7-388)||(4919012-4919406)
chr1 (388-623)||(4919477-4919712)
chr1 (140-204)||(4918657-4918722)
chr1 (489-564)||(32678390-32678467)
chr1 (514-564)||(11620118-11620168)
chr1 (406-454)||(16584998-16585046)
chr1 (406-470)||(25785765-25785829)
[»] chr7 (8 HSPs)
chr7 (77-204)||(9043270-9043398)
chr7 (486-623)||(35738011-35738147)
chr7 (486-584)||(27226827-27226925)
chr7 (512-620)||(12470103-12470211)
chr7 (497-564)||(3996879-3996946)
chr7 (500-564)||(46265239-46265303)
chr7 (500-543)||(44523629-44523672)
chr7 (487-543)||(32971397-32971453)
[»] chr6 (9 HSPs)
chr6 (496-620)||(7551276-7551398)
chr6 (485-623)||(23300588-23300728)
chr6 (486-614)||(26879951-26880073)
chr6 (486-623)||(9826909-9827048)
chr6 (506-623)||(11971602-11971721)
chr6 (496-584)||(12263171-12263259)
chr6 (140-204)||(5251389-5251452)
chr6 (506-623)||(11846432-11846551)
chr6 (500-537)||(20722422-20722459)
[»] chr2 (11 HSPs)
chr2 (498-623)||(30340555-30340680)
chr2 (506-584)||(27866802-27866880)
chr2 (500-596)||(38607152-38607253)
chr2 (506-552)||(37630522-37630568)
chr2 (401-470)||(4638163-4638232)
chr2 (506-584)||(5526408-5526488)
chr2 (401-494)||(27866621-27866713)
chr2 (506-543)||(33036994-33037031)
chr2 (535-614)||(28199801-28199880)
chr2 (406-493)||(32296615-32296702)
chr2 (522-623)||(22848082-22848185)
[»] chr4 (7 HSPs)
chr4 (496-623)||(8606009-8606136)
chr4 (500-543)||(8056897-8056940)
chr4 (407-470)||(13207484-13207547)
chr4 (486-543)||(53393112-53393169)
chr4 (515-623)||(13207264-13207375)
chr4 (406-454)||(23108045-23108093)
chr4 (410-462)||(33884351-33884403)
[»] chr8 (14 HSPs)
chr8 (486-564)||(37379969-37380047)
chr8 (500-623)||(9040598-9040723)
chr8 (406-543)||(20860363-20860500)
chr8 (410-493)||(9040435-9040518)
chr8 (486-623)||(3767533-3767670)
chr8 (407-493)||(3767741-3767827)
chr8 (489-623)||(25456007-25456143)
chr8 (402-493)||(34760891-34760983)
chr8 (506-622)||(16570738-16570856)
chr8 (500-543)||(32321985-32322028)
chr8 (504-584)||(40434868-40434950)
chr8 (406-456)||(7956462-7956512)
chr8 (514-564)||(35949027-35949077)
chr8 (406-456)||(44223449-44223499)
[»] chr3 (6 HSPs)
chr3 (486-560)||(27524189-27524263)
chr3 (485-543)||(11503283-11503341)
chr3 (499-623)||(26757778-26757906)
chr3 (489-552)||(26918390-26918453)
chr3 (506-543)||(23659576-23659613)
chr3 (506-583)||(779412-779491)
[»] chr5 (3 HSPs)
chr5 (500-613)||(39786134-39786251)
chr5 (507-623)||(1498069-1498187)
chr5 (406-493)||(39785970-39786057)
[»] scaffold0070 (2 HSPs)
scaffold0070 (500-623)||(13932-14057)
scaffold0070 (491-543)||(33886-33938)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 388
Target Start/End: Original strand, 4919012 - 4919406
Alignment:
Q  7 aaatgcttttgaatggttcaattcatagttattcaaacacaagttaacactgaagaacacgagcaataagaacaagagtacaaataaatggcaaagaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4919012 aaatgcttttgaatggttcaattcatagttattcaaacacaagttaacactgaagaacacgagcaataagaacaaaagtacaaataaatggcaaagaaca 4919111  T
Q  107 aaatggatcaatcaaagccgaaagcaatggaacgtgaacaaaagtagttagtagagattttatttggattttccatttttaattcacttgtggtgatg-- 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  4919112 aaatggatcaatcaaagccgaaagcaatggaacgtgaacaaaagtagttagtagagattttatttggattttccatttttaattcacttgtggtgatgtg 4919211  T
Q  205 -----------cattctaattggttgaagttgtaaaattgatttaacatgacagtctattcaagttaatccccatgaaaaatcaacattaaacacattta 293  Q
               |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||    
T  4919212 tcaaaattactcattctaattggttgaagttgtaaaattgatttaccatgacagtctattctagttaacctccatgaaaaatcaacattacacacattta 4919311  T
Q  294 tatacaaaagataatttagaagttgttacacacttttaaataaatttattattatagcaatttttcttaatacccgtaatttttataatacacag 388  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4919312 tatacaaaagataattttgtagttgttacacacttttaaataaatttattattatagccatttttcttaatacccgtaatttttataatatacag 4919406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 388 - 623
Target Start/End: Original strand, 4919477 - 4919712
Alignment:
Q  388 gtaggtcatcccattagaggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaa 487  Q
    ||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4919477 gtaggtcattccattaggggtgtaagtggtagggacaaaaccgacgaaaccgaaagttcaaaccgaaaaggtatctgaccttgcctggtttggatcaaaa 4919576  T
Q  488 ccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcatt 587  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4919577 ccgaactgatggtaatcccactctccattttactaatactatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcctt 4919676  T
Q  588 gatccattcgctctctcccttcatcatttcatctca 623  Q
    ||||||||| || |||||||||||||| ||||||||    
T  4919677 gatccattcactttctcccttcatcatctcatctca 4919712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 4918722 - 4918657
Alignment:
Q  140 gtgaacaaaagtagttagtagagattttatttgga-ttttccatttttaattcacttgtggtgatg 204  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  4918722 gtgaacaaaagtagttaatagagattttatttggattttttcatttttaatttacttgtgttgatg 4918657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 564
Target Start/End: Complemental strand, 32678467 - 32678390
Alignment:
Q  489 cgaactcatggtaaccccactctccattttactaatattatccctcct--cacacacttatgattagacccaaaatta 564  Q
    |||||| ||| ||||| ||||| |||||||| |||||||||||||| |  |||||||||||||||| || ||||||||    
T  32678467 cgaactgatgctaacctcactccccattttagtaatattatccctcataacacacacttatgattaaactcaaaatta 32678390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 564
Target Start/End: Original strand, 11620118 - 11620168
Alignment:
Q  514 attttactaatattatccctcctcacacacttatgattagacccaaaatta 564  Q
    ||||||||||||||||||  ||||||| ||||||| ||| |||||||||||    
T  11620118 attttactaatattatcctacctcacaaacttatggttaaacccaaaatta 11620168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 16585046 - 16584998
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaa 454  Q
    |||||||| ||| ||||||||||| |||||||||||||| |||| ||||    
T  16585046 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 16584998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 470
Target Start/End: Original strand, 25785765 - 25785829
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttg 470  Q
    |||||||| ||| ||||||||||| ||||||| |||| |||||| ||||||  |||| |||||||    
T  25785765 ggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttg 25785829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 9043270 - 9043398
Alignment:
Q  77 aacaagagtacaaataaatggcaaagaacaaaatggatcaatcaaagccgaaagcaatggaacgtgaacaaaagtagttagtagagatttta-tttggat 175  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||| |||  ||||||| ||||||||||||||||||||||||||||| |||| ||    
T  9043270 aacatgagtacaattaaatggcaaagaacaaaatcgatcaatcaaagccaaaaataatggaatgtgaacaaaagtagttagtagagattttattttgaat 9043369  T
Q  176 tttccatttttaattcacttgtggtgatg 204  Q
    ||||||||| ||||||||||||| |||||    
T  9043370 tttccatttataattcacttgtgttgatg 9043398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 35738147 - 35738011
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactca 585  Q
    |||| |||| || |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||  |||||||||||||||     
T  35738147 aaccaaactgattgtaaccccactccccattttactaatattatccctcatcacacacttatgattaggcccaaaattaaattccaacataaaatactcc 35738048  T
Q  586 ttgatccattcgctctctcccttcatcatttcatctca 623  Q
    || |||||||| || |||||| ||||||| ||||||||    
T  35738047 ttaatccattcact-tctcccatcatcatctcatctca 35738011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 486 - 584
Target Start/End: Complemental strand, 27226925 - 27226827
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    ||||||||  ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||  || ||||||||| |||||    
T  27226925 aaccgaaccgatggtaatctcactctccattttactaatattatccctcctaacacacttatgattaggcctaaaattaagtcccaacataaagtactc 27226827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 512 - 620
Target Start/End: Complemental strand, 12470211 - 12470103
Alignment:
Q  512 ccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctctcccttcat 611  Q
    |||||||| |||||||||||||| ||||||||||||||||  || |||||||| |   ||||||||||||||| ||||| ||||| ||||||||| ||||    
T  12470211 ccattttagtaatattatccctcttcacacacttatgattcaactcaaaattaaagtccaacataaaatactctttgattcattcactctctcccatcat 12470112  T
Q  612 catttcatc 620  Q
    ||| |||||    
T  12470111 catctcatc 12470103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 564
Target Start/End: Complemental strand, 3996946 - 3996879
Alignment:
Q  497 tggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaatta 564  Q
    ||||||| |||||| | |||||||||||| || | |||||||||||||||||||||  ||||||||||    
T  3996946 tggtaactccactcccaattttactaataataactctcctcacacacttatgattatgcccaaaatta 3996879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 564
Target Start/End: Complemental strand, 46265303 - 46265239
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaatta 564  Q
    |||| ||||||  |||||||||| |||| ||| ||||||||||||||||||||  ||||||||||    
T  46265303 taactccactcctcattttactattattgtccttcctcacacacttatgattatgcccaaaatta 46265239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 543
Target Start/End: Complemental strand, 44523672 - 44523629
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctcacacac 543  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||    
T  44523672 taacctcactctccattttagtaatattatcgctcctcacacac 44523629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 543
Target Start/End: Original strand, 32971397 - 32971453
Alignment:
Q  487 accgaactcatggtaaccccactctccattttactaatattatccctcctcacacac 543  Q
    |||||||  ||| ||||| |||||||||||||   ||||||||||||||||||||||    
T  32971397 accgaaccgatgctaacctcactctccatttttgaaatattatccctcctcacacac 32971453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 496 - 620
Target Start/End: Complemental strand, 7551398 - 7551276
Alignment:
Q  496 atggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccatt 595  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||| ||| | ||| ||||||||  || |||||||    
T  7551398 atggtaaccccactctccattttacaaatattattcctcctcacac--ttatgattagacccaaaattaaatcactacaaaaaatacttcttaatccatt 7551301  T
Q  596 cgctctctcccttcatcatttcatc 620  Q
    | || |||||| ||||||| |||||    
T  7551300 cactttctcccgtcatcatctcatc 7551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 23300588 - 23300728
Alignment:
Q  485 aaaccgaactcatggtaaccccactctccattttactaatattatccctcctc--acacacttatgattagacccaaaattagatcgcaacataaaatac 582  Q
    |||||||||  ||| ||||  |||||||||||||| |||||||||||||||||  ||||||||||||||| || |||||||| |   |||||||||||||    
T  23300588 aaaccgaaccgatgctaacttcactctccattttagtaatattatccctcctcatacacacttatgattaaactcaaaattaaagtccaacataaaatac 23300687  T
Q  583 tcattgatccattcgctctctcccttcatcatttcatctca 623  Q
    || || || | ||| || | |||| ||||||| ||||||||    
T  23300688 tccttaattctttcactttttcccatcatcatctcatctca 23300728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 614
Target Start/End: Original strand, 26879951 - 26880073
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactca 585  Q
    ||||||||  |||||||||||| ||  ||||| |||||||||||||||||||||| ||      ||||  ||||||||| | | ||||||||||||||||    
T  26879951 aaccgaaccgatggtaaccccattcctcatttcactaatattatccctcctcacatac------ttaggtccaaaattaaagctcaacataaaatactca 26880044  T
Q  586 ttgatccattcgctctctcccttcatcat 614  Q
    || |||||||| || |||||| |||||||    
T  26880045 ttaatccattcactttctcccatcatcat 26880073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 623
Target Start/End: Original strand, 9826909 - 9827048
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacaca--cttatgattagacccaaaattagatcgcaacataaaatact 583  Q
    |||| |||| ||| ||||| ||||  || ||||| ||||||||||||||||||||||  ||||||||||  | ||| |||| |   ||||||||||||||    
T  9826909 aaccaaactgatgttaacctcacttcccgttttagtaatattatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatact 9827008  T
Q  584 cattgatccattcgctctctcccttcatcatttcatctca 623  Q
    | || || ||||| || |||||| ||||||| ||||||||    
T  9827009 ccttaattcattcactttctcccatcatcatctcatctca 9827048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 623
Target Start/End: Original strand, 11971602 - 11971721
Alignment:
Q  506 cactctccattttactaatattatccctcct--cacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctct 603  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||||||||  | |||||||| |   ||||||||||||||| || || ||| | || |||    
T  11971602 cactccccattttagtaatattatccctcctcacacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaattcatccactttct 11971701  T
Q  604 cccttcatcatttcatctca 623  Q
     || ||||||| ||||||||    
T  11971702 tccatcatcatctcatctca 11971721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 584
Target Start/End: Original strand, 12263171 - 12263259
Alignment:
Q  496 atggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    |||||||| |||||  |||||||||||| |||||||||||||| |||||||| ||||   ||||||||| | | ||| |||||||||||    
T  12263171 atggtaactccactaaccattttactaaaattatccctcctcaaacacttattattatgtccaaaattaaagcccaagataaaatactc 12263259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 5251452 - 5251389
Alignment:
Q  140 gtgaacaaaagtagttagtagagattttatttggattttccatttttaattcacttgtggtgatg 204  Q
    |||||||||||| |||| ||||||||| ||||| ||||| || |||||||||||||||| |||||    
T  5251452 gtgaacaaaagtggttattagagatttgatttgtatttttca-ttttaattcacttgtgttgatg 5251389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 623
Target Start/End: Original strand, 11846432 - 11846551
Alignment:
Q  506 cactctccattttactaatattatccctcct--cacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctct 603  Q
    ||||| |||||||| ||||||||||||||||  ||||||||||||||||  | |||||||| |   ||||||| ||||||| || || ||| | || |||    
T  11846432 cactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaagtccaacatacaatactccttaattcatccactttct 11846531  T
Q  604 cccttcatcatttcatctca 623  Q
     || ||||||| ||||||||    
T  11846532 tccatcatcatctcatctca 11846551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 20722422 - 20722459
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctc 537  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  20722422 taaccccactccccattttactaacattatccctcctc 20722459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 498 - 623
Target Start/End: Original strand, 30340555 - 30340680
Alignment:
Q  498 ggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcg 597  Q
    |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||| |   ||||||||||||||| || || |||||     
T  30340555 ggtaactccactccctattttactaatattatccctcctcacacacttatgattagacctaaaattaaagttcaacataaaatactcttttattcattca 30340654  T
Q  598 ctctctcccttcatcatttcatctca 623  Q
    || |||||| | |||||  |||||||    
T  30340655 ctttctcccattatcatcacatctca 30340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 584
Target Start/End: Original strand, 27866802 - 27866880
Alignment:
Q  506 cactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||  | |||||||| |   |||||||||||||||    
T  27866802 cactcaccattttagtaatattatcactcctcacacacttatgattaatctcaaaattaaagtccaacataaaatactc 27866880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 596
Target Start/End: Original strand, 38607152 - 38607253
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctcac------acacttatgattagacccaaaattagatcgcaacataaaatactcattgatcca 593  Q
    ||||| ||||| ||||||||||||| ||||||||||||||      |||||||||||||| ||||||||||  || ||||||||||||||  || |||||    
T  38607152 taaccacactcgccattttactaatgttatccctcctcacacgcaaacacttatgattaggcccaaaattaagtc-caacataaaatactatttaatcca 38607250  T
Q  594 ttc 596  Q
    |||    
T  38607251 ttc 38607253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 552
Target Start/End: Original strand, 37630522 - 37630568
Alignment:
Q  506 cactctccattttactaatattatccctcctcacacacttatgatta 552  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  37630522 cactccccactttagtaatattatccctcctcacacacttatgatta 37630568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 470
Target Start/End: Original strand, 4638163 - 4638232
Alignment:
Q  401 ttagaggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttg 470  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||| |||| ||||||  |||| |||||||    
T  4638163 ttagaggtgtaagcggttcagactaaaccaacgaaaccgaaagtccaaaccgaaaaaatatccgaccttg 4638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 584
Target Start/End: Original strand, 5526408 - 5526488
Alignment:
Q  506 cactctccattttactaatattatccctcct--cacacacttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    ||||| |||||||| || |||||||||||||  |||||||||||||||| || |||||||| |   |||||||||||||||    
T  5526408 cactccccattttagtattattatccctccttacacacacttatgattaaactcaaaattaaagtccaacataaaatactc 5526488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 27866621 - 27866713
Alignment:
Q  401 ttagaggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaact 494  Q
    |||| |||||||| ||| ||||||||| |||  ||||||||| | |||| ||||||| |||| |||||||| ||||| || |||||||||||||    
T  27866621 ttaggggtgtaagtggttcggacaaaatcgataaaaccgaaaatccaaaccgaaaag-tatccgaccttgcttggttcggttcaaaaccgaact 27866713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 33037031 - 33036994
Alignment:
Q  506 cactctccattttactaatattatccctcctcacacac 543  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33037031 cactctccattttagtaatattatccctcctcacacac 33036994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 614
Target Start/End: Original strand, 28199801 - 28199880
Alignment:
Q  535 ctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctctcccttcatcat 614  Q
    ||||||||||||||||||| || ||||||| |   ||||||| ||||||| || |||||||| || |||||| |||||||    
T  28199801 ctcacacacttatgattaggcctaaaattaaagtccaacatataatactccttaatccattcactttctcccatcatcat 28199880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 32296615 - 32296702
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaac 493  Q
    ||||| ||||||| ||||||||||||| ||| ||||||| ||||   ||||  |||||||| ||| || |||||| ||||||||||||    
T  32296615 ggtgtgagcggtaaggacaaaaccgactaaatcgaaagtccaaactaaaaaaatatctgacattgtctagtttggttcaaaaccgaac 32296702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 623
Target Start/End: Complemental strand, 22848185 - 22848082
Alignment:
Q  522 aatattatccctcctcacacac--ttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctctcccttcatcatttcat 619  Q
    ||||||||||||||||||||||  |||||||||  | |||| ||| |   |||||||||||||||  | || ||||| || |||||| ||||||| ||||    
T  22848185 aatattatccctcctcacacacacttatgattaagctcaaagttaaaggccaacataaaatactccattattcattcactttctcccatcatcatctcat 22848086  T
Q  620 ctca 623  Q
    ||||    
T  22848085 ctca 22848082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 8606136 - 8606009
Alignment:
Q  496 atggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccatt 595  Q
    ||||||||| ||||| ||||||||||||||| ||  ||||||| |||||||| ||||| |||||||||| |   ||||||||||||||| || || ||||    
T  8606136 atggtaaccacactccccattttactaatataatttctcctcatacacttattattaggcccaaaattaaagtccaacataaaatactccttaattcatt 8606037  T
Q  596 cgctctctcccttcatcatttcatctca 623  Q
    | || |||||  ||||||||||||||||    
T  8606036 cactttctcctatcatcatttcatctca 8606009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 8056897 - 8056940
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctcacacac 543  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  8056897 taaccccactccccattttactaatattatccttcctcacacac 8056940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 13207547 - 13207484
Alignment:
Q  407 gtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttg 470  Q
    ||||||||||| ||||||||||||| |||| ||||| | |||| |||||| |||||||| ||||    
T  13207547 gtgtaagcggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaaaagtatctgatcttg 13207484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 543
Target Start/End: Complemental strand, 53393169 - 53393112
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacac 543  Q
    ||||||||  ||| ||||| |||| ||||||||| |||||||||||||| ||||||||    
T  53393169 aaccgaaccgatgctaacctcactttccattttagtaatattatccctcttcacacac 53393112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 623
Target Start/End: Complemental strand, 13207375 - 13207264
Alignment:
Q  515 ttttactaatattatccctcctca--cacacttatgattagacccaaaa-ttagatcgcaacataaaatactcattgatccattcgctctctcccttcat 611  Q
    ||||||||||||||||| || |||  | ||||||||||||  | ||||| ||| | | |||||||||||||||||| |||||||| || ||| |  ||||    
T  13207375 ttttactaatattatccttcatcatgctcacttatgattaagctcaaaaattaaagcccaacataaaatactcattaatccattcactttcttctatcat 13207276  T
Q  612 catttcatctca 623  Q
    ||| ||||||||    
T  13207275 catctcatctca 13207264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 23108093 - 23108045
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaa 454  Q
    |||||||| ||| ||||||||||| |||||||||||||| |||| ||||    
T  23108093 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa 23108045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 33884403 - 33884351
Alignment:
Q  410 taagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatc 462  Q
    |||| ||| |||||||||||||||||||||||| || ||| |||||| |||||    
T  33884403 taagtggttcggacaaaaccgacgaaaccgaaaatttaaaacgaaaaagtatc 33884351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 486 - 564
Target Start/End: Complemental strand, 37380047 - 37379969
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaaatta 564  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||  |||||| |||||| ||||||||    
T  37380047 aaccgaaccaatggtaaccccactctccattttactaatattatcactcctcacattcttatggttagactcaaaatta 37379969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 623
Target Start/End: Original strand, 9040598 - 9040723
Alignment:
Q  500 taaccccactctccattttactaatattatccctcct--cacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcg 597  Q
    ||||||||||  ||||||||||| |||||||||||||  ||||||||||||||||| | |||||||| | | ||| ||||||||||  || || |||||     
T  9040598 taaccccacttcccattttactattattatccctcctcacacacacttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattca 9040697  T
Q  598 ctctctcccttcatcatttcatctca 623  Q
    || |||||| | ||||| ||||||||    
T  9040698 ctttctcccattatcatctcatctca 9040723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 406 - 543
Target Start/End: Complemental strand, 20860500 - 20860363
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaactcatggtaaccc 505  Q
    |||||||| ||| || |||||||||| |||||||||| ||||||  |||||  ||||||||||||  ||||| |  |||||| | |||  ||| ||| |     
T  20860500 ggtgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaactgaaaaattatctgaccttgtttggttcgattcaaaatcaaaccgatgctaatct 20860401  T
Q  506 cactctccattttactaatattatccctcctcacacac 543  Q
    |||||  ||||||| |||||||||| ||||||||||||    
T  20860400 cactcctcattttagtaatattatcactcctcacacac 20860363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 493
Target Start/End: Original strand, 9040435 - 9040518
Alignment:
Q  410 taagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaac 493  Q
    |||||||| |||| |||||||| |||| ||||||| |||| |||||| ||||| |||||||||| | | || ||||||||||||    
T  9040435 taagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaaaatgtatccgaccttgccttgataggttcaaaaccgaac 9040518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 3767670 - 3767533
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacac-ttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    ||||||||  ||| ||||| ||||| |||||||| ||||||||||||| |||||||||  |||||||| || |||||||| |   |||||||||||  ||    
T  3767670 aaccgaaccgatgctaacctcactccccattttagtaatattatcccttctcacacacactatgattaaactcaaaattaaagtccaacataaaattatc 3767571  T
Q  585 attgatccattcgctctctcccttcatcatttcatctca 623  Q
     || |||||||| || |||||| | ||||| ||||||||    
T  3767570 cttaatccattcactttctcccat-atcatctcatctca 3767533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 493
Target Start/End: Complemental strand, 3767827 - 3767741
Alignment:
Q  407 gtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaac 493  Q
    ||||||| ||| ||||||||||||| |||||||||| | |||| |||||| ||||| |||||||  | ||| || ||||||||||||    
T  3767827 gtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaac 3767741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 623
Target Start/End: Complemental strand, 25456143 - 25456007
Alignment:
Q  489 cgaactcatggtaaccccactctccattttactaatattatccctc--ctcacacacttatgattagacccaaaattagatcgcaacataaaatactcat 586  Q
    |||||| ||| ||||| ||||| ||||||||||| |||||||||||  | ||||||||||||| ||  |||||||||| | | || |||||| ||||  |    
T  25456143 cgaactgatgctaacctcactccccattttactattattatccctcttcacacacacttatgagtatgcccaaaattaaagcccagcataaagtactact 25456044  T
Q  587 tgatccattcgctctctcccttcatcatttcatctca 623  Q
    | |||||||| || ||| |  ||||||| ||||||||    
T  25456043 taatccattcactttcttctatcatcatatcatctca 25456007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 493
Target Start/End: Complemental strand, 34760983 - 34760891
Alignment:
Q  402 tagaggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcg-aaaaggtatctgaccttgcctggtttggatcaaaaccgaac 493  Q
    |||||||||||||||| || |||||||||| |||||||||| | |||| || |||| |||||||| ||||  ||||| || |||||| |||||    
T  34760983 tagaggtgtaagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccgaaaaaagtatctgatcttgtttggttcggttcaaaatcgaac 34760891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 622
Target Start/End: Complemental strand, 16570856 - 16570738
Alignment:
Q  506 cactctccattttactaatattatccctcctcacacac--ttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctct 603  Q
    ||||| |||||||| || ||||||||||||||||||||  ||||||||| || |||||||| |   ||| ||||||||||| || || | ||| || |||    
T  16570856 cactccccattttagtattattatccctcctcacacacatttatgattaaactcaaaattaaaatacaatataaaatactccttaattcgttcactttct 16570757  T
Q  604 cccttcatcatttcatctc 622  Q
     || ||||||| |||||||    
T  16570756 gccatcatcatctcatctc 16570738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 32321985 - 32322028
Alignment:
Q  500 taaccccactctccattttactaatattatccctcctcacacac 543  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||    
T  32321985 taacctcactctccattttagtaatattatctctcctcacacac 32322028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 584
Target Start/End: Complemental strand, 40434950 - 40434868
Alignment:
Q  504 cccactctccattttactaatattatccctcctc--acacacttatgattagacccaaaattagatcgcaacataaaatactc 584  Q
    |||||||| ||||||||||| |||||| ||||||  ||||| |||||||||| |  ||||| | ||| |||||||||||||||    
T  40434950 cccactcttcattttactaacattatctctcctcatacacatttatgattaggcttaaaatgaaatcccaacataaaatactc 40434868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 7956512 - 7956462
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaa 456  Q
    |||||||| ||| ||||||||||| |||||||||||||| |||| ||||||    
T  7956512 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaa 7956462  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 564
Target Start/End: Original strand, 35949027 - 35949077
Alignment:
Q  514 attttactaatattatccctcctcacacacttatgattagacccaaaatta 564  Q
    ||||||||||||||||||  ||||||| ||||||| |||| ||||||||||    
T  35949027 attttactaatattatcctacctcacaaacttatggttaggcccaaaatta 35949077  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 44223499 - 44223449
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaa 456  Q
    |||||||| ||| ||||||||||| |||||||||||||| |||| ||||||    
T  44223499 ggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaa 44223449  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 27524189 - 27524263
Alignment:
Q  486 aaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgattagacccaaa 560  Q
    ||||||||  ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||    
T  27524189 aaccgaaccaatggtaaccccactccccattttactattattatctctcctcacacacttatgattaggcccaaa 27524263  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 11503341 - 11503283
Alignment:
Q  485 aaaccgaactcatggtaaccccactctccattttactaatattatccctcctcacacac 543  Q
    ||||||||| |||| ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  11503341 aaaccgaacccatgctaacctcactccccattttactattattatccctcctcacacac 11503283  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 623
Target Start/End: Original strand, 26757778 - 26757906
Alignment:
Q  499 gtaaccccactctccattttactaatattatccctc----ctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccat 594  Q
    |||||| |||||||||||||| ||||||||||| ||    | ||||||||||||||||  | |||||||| |   ||||||||||||||| || || |||    
T  26757778 gtaacctcactctccattttagtaatattatccttccacacacacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcat 26757877  T
Q  595 tcgctctctcccttcatcatttcatctca 623  Q
    || || |||| | ||||||| ||||||||    
T  26757878 tcactttctctcatcatcatctcatctca 26757906  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 552
Target Start/End: Complemental strand, 26918453 - 26918390
Alignment:
Q  489 cgaactcatggtaaccccactctccattttactaatattatccctcctcacacacttatgatta 552  Q
    |||||| ||| |||||| |||| | |||||| ||||||||||||||||||||||||||| ||||    
T  26918453 cgaactgatgctaaccctactccctattttagtaatattatccctcctcacacacttataatta 26918390  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 23659576 - 23659613
Alignment:
Q  506 cactctccattttactaatattatccctcctcacacac 543  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23659576 cactctccattttagtaatattatccctcctcacacac 23659613  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 583
Target Start/End: Complemental strand, 779491 - 779412
Alignment:
Q  506 cactctccattttactaatattatccctcctcaca--cacttatgattagacccaaaattagatcgcaacataaaatact 583  Q
    |||||||||||||  ||||| |||| |||||||||  |||||||||||| || |||||||| |   ||||||||||||||    
T  779491 cactctccatttttgtaatactatcactcctcacatacacttatgattaaactcaaaattaaaggccaacataaaatact 779412  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 500 - 613
Target Start/End: Original strand, 39786134 - 39786251
Alignment:
Q  500 taaccccactctccattttactaatattatccctcct----cacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccatt 595  Q
    |||||| | |||||||||||||||||||||| || ||    |||||||||||||||| ||||||||||| |  |  |||||||||| ||||  |||||||    
T  39786134 taacccgaatctccattttactaatattatctcttctcgcacacacacttatgattaaacccaaaattaaagtgtgacataaaatagtcatgaatccatt 39786233  T
Q  596 cgctctctcccttcatca 613  Q
    |||| |||||| ||||||    
T  39786234 cgctttctcccatcatca 39786251  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 623
Target Start/End: Complemental strand, 1498187 - 1498069
Alignment:
Q  507 actctccattttactaatattatccctcctc--acacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcgctctctc 604  Q
    |||| |||||||| ||||||||||||| |||  |||||||||||||||  | |||||||  |   |||| |||||||||| || || ||||| || ||||    
T  1498187 actccccattttagtaatattatcccttctcgcacacacttatgattaagctcaaaattgaagtccaacctaaaatactccttaatacattcactttctc 1498088  T
Q  605 ccttcatcatttcatctca 623  Q
    || ||||||||||||||||    
T  1498087 ccatcatcatttcatctca 1498069  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 39785970 - 39786057
Alignment:
Q  406 ggtgtaagcggtacggacaaaaccgacgaaaccgaaagttcaaatcgaaaaggtatctgaccttgcctggtttggatcaaaaccgaac 493  Q
    |||||||| |||  |||||||||||||||||||||| || ||||   |||| ||||||||| ||  ||||||||| | ||||||||||    
T  39785970 ggtgtaagtggtttggacaaaaccgacgaaaccgaatgtccaaactaaaaaagtatctgactttatctggtttggttgaaaaccgaac 39786057  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 623
Target Start/End: Original strand, 13932 - 14057
Alignment:
Q  500 taaccccactctccattttactaatattatccctc--ctcacacacttatgattagacccaaaattagatcgcaacataaaatactcattgatccattcg 597  Q
    ||||| ||||| ||||||||||| |||||| ||||  | ||||||||||||| ||  |||||||||| | | || |||||| ||||  || ||||||||     
T  13932 taacctcactccccattttactattattatacctcttcacacacacttatgagtatgcccaaaattaaagcccagcataaagtactacttaatccattca 14031  T
Q  598 ctctctcccttcatcatttcatctca 623  Q
    || ||| || ||||||| ||||||||    
T  14032 ctttcttccatcatcatctcatctca 14057  T

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Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 33886 - 33938
Alignment:
Q  491 aactcatggtaaccccactctccattttactaatattatccctcctcacacac 543  Q
    |||| ||||||||| ||||| ||||||||||| ||||||||||| ||| ||||    
T  33886 aactgatggtaacctcactccccattttactattattatccctcttcaaacac 33938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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