View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13282_low_6 (Length: 609)
Name: NF13282_low_6
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 5 - 590
Target Start/End: Complemental strand, 5391382 - 5390794
Alignment:
| Q |
5 |
ggtagattatactaaacaaacaaattattgtcaataaaatacgtcacaacatacacta---ttatataattagatgaactatatttttattcaggtgggt |
101 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391382 |
ggtaaattaaactaaacaaacaaattattgtcaataaaatacgtcacaacatacactactattatataattagatgaactatatttttattcaggtgggt |
5391283 |
T |
|
| Q |
102 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391282 |
aagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacg |
5391183 |
T |
|
| Q |
202 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccga |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391182 |
ctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatgctaatttaatatccga |
5391083 |
T |
|
| Q |
302 |
acaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgtta |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391082 |
acaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgtta |
5390983 |
T |
|
| Q |
402 |
gcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattg |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390982 |
gcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattg |
5390883 |
T |
|
| Q |
502 |
tgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttg |
590 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5390882 |
tgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttg |
5390794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 86 - 590
Target Start/End: Complemental strand, 5400017 - 5399513
Alignment:
| Q |
86 |
ttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5400017 |
ttttattcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
5399918 |
T |
|
| Q |
186 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5399917 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatg |
5399818 |
T |
|
| Q |
286 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399817 |
ctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaaca |
5399718 |
T |
|
| Q |
386 |
tttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399717 |
tttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttgaggttatcggatttgatgaaggataagggtggt |
5399618 |
T |
|
| Q |
486 |
gtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtg |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5399617 |
gtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtg |
5399518 |
T |
|
| Q |
586 |
tgttg |
590 |
Q |
| |
|
||||| |
|
|
| T |
5399517 |
tgttg |
5399513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 53 - 590
Target Start/End: Complemental strand, 5394869 - 5394332
Alignment:
| Q |
53 |
acatacactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttgga |
152 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
5394869 |
acatacattattatataattaaatgaacaatatatttgttcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaccccatctttgga |
5394770 |
T |
|
| Q |
153 |
ttttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaag |
252 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5394769 |
ttttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaag |
5394670 |
T |
|
| Q |
253 |
ctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaa |
352 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
5394669 |
gtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatttggggtgcagcggatcctaacgcaaagaatgaagcattcaa |
5394570 |
T |
|
| Q |
353 |
ctgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttg |
452 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5394569 |
ttgcagtaatggtgatgttttcaagtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggaggggtcggagttg |
5394470 |
T |
|
| Q |
453 |
aggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5394469 |
aggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggt |
5394370 |
T |
|
| Q |
553 |
ggtttgcagattttatgttgagagtggagggtgtgttg |
590 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
5394369 |
ggtttgcagattttagtttgagactggagggtgtgttg |
5394332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 144 - 563
Target Start/End: Complemental strand, 3819103 - 3818681
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
|
|
| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
3819004 |
T |
|
| Q |
244 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
343 |
Q |
| |
|
| | || || ||||| ||| | | ||||| ||||| |||| || | |||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
3819003 |
ggactaagttagcttgggagaattactacatggcttctgatgcagatttgattgctgaacaacatatttgggctgcagtggatccttatgctaagaatga |
3818904 |
T |
|
| Q |
344 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggagg-- |
441 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| | || |||| |||| ||| || || ||||| || || |||| |
|
|
| T |
3818903 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggttatcgcggaacaatttgggattgaggagtatgggttcgacgaggaa |
3818804 |
T |
|
| Q |
442 |
ggtcggag-ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaag |
540 |
Q |
| |
|
|||| | |||| |||| |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||| | || ||||| ||||||| |
|
|
| T |
3818803 |
ggtcctcgtttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtaacgaagctggaagaag |
3818704 |
T |
|
| Q |
541 |
ttggagattggtggtttgcagat |
563 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
3818703 |
ttgctgagtggtggtttgcagat |
3818681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 144 - 563
Target Start/End: Original strand, 47338774 - 47339196
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctg |
243 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| || || ||||| | |
|
|
| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttccgttgagatttccag |
47338873 |
T |
|
| Q |
244 |
gctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaatgcaaagaatga |
343 |
Q |
| |
|
| | || || ||||| ||| | | ||||| |||||| |||| || | || ||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
47338874 |
ggactaagttagcttgggagaattactacatggcttctgatgctgatttgattgctgagcaacatatttgggctgcagtggatccttatgctaagaatga |
47338973 |
T |
|
| Q |
344 |
agcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggatttgaggagg-- |
441 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||||| || ||||||||||| | || |||| |||| ||| || || ||||| || || |||| |
|
|
| T |
47338974 |
agcattcaattgtagtaatggtgatgtttttaggtggaagcaattgtggaaggttatcgcggaacaatttgggattgaggagtatgggttcgacgaggaa |
47339073 |
T |
|
| Q |
442 |
ggtcggag-ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaatgaattgttgcacaccaagcttgaagaag |
540 |
Q |
| |
|
|||| | |||| |||| |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||| | || ||||| ||||||| |
|
|
| T |
47339074 |
ggtcctcgtttgaagttaacggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtgacgaagctggaagaag |
47339173 |
T |
|
| Q |
541 |
ttggagattggtggtttgcagat |
563 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
47339174 |
ttgctgagtggtggtttgcagat |
47339196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 133 - 512
Target Start/End: Original strand, 47347233 - 47347615
Alignment:
| Q |
133 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccatt |
232 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || ||||||| ||| |||| || ||||||||||| ||||||||||||||||| || ||| |||| || |
|
|
| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagcacgaaggtgttccgtt |
47347332 |
T |
|
| Q |
233 |
aaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatttggggtgcagtggatcctaat |
332 |
Q |
| |
|
| ||||| || |||| | || ||||| | |||||| ||||| ||||| |||| || | || ||||||||||||| |||||||||||| || |
|
|
| T |
47347333 |
gaaatttcccggtacaaagggagcttgggagtcttattctgtggcttctgatgcggatttgattgcagagcaacatatttgggccgcagtggatccttat |
47347432 |
T |
|
| Q |
333 |
gcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggtgttagcagaacggtttgagatcgatgattatggat |
432 |
Q |
| |
|
|| ||||| ||||| || ||||| |||||||| |||||||| || |||||||| | |||||||| || || |||| ||||| ||| || || ||||| | |
|
|
| T |
47347433 |
gctaagaacgaagcttttaactgtagcaatggtgatgtttttagatggaaacaactatggaaggttttggcggaacagtttgggattgaggagtatgggt |
47347532 |
T |
|
| Q |
433 |
ttgaggagg--ggtcggag-ttgaggttatcggatttgatgaaggataagggtggtgtgtgggaagagattgtgagggagaat |
512 |
Q |
| |
|
|||| |||| |||| | |||| ||| ||||| |||||||||||||||||| ||| ||||| |||||||||| ||||||| |
|
|
| T |
47347533 |
ttgacgaggaaggtcctcgtttgaagttgtcggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaat |
47347615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 397
Target Start/End: Original strand, 47349942 - 47350036
Alignment:
| Q |
303 |
caacatatttggggtgcagtggatcctaatgcaaagaatgaagcattcaactgcagcaatggcgatgttttcaggtggaaacatttgtggaaggt |
397 |
Q |
| |
|
||||| ||||||| |||||||||| || |||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
47349942 |
caacacatttgggctgcagtggatacttatgctaagaatgaagcgttcaattgtagcaatggtgatgtttttaggtggaaacaattgtggaaggt |
47350036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
144 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
220 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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