View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_8 (Length: 530)
Name: NF13282_low_8
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 32 - 530
Target Start/End: Complemental strand, 33127189 - 33126690
Alignment:
| Q |
32 |
catactagagtcctaactaaatatt-gcttcaaaccgttcatacatggctttagaagttaaaaagatggcaatatcaagagaagtatcaacaattatatg |
130 |
Q |
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| T |
33127189 |
catactagagtcctaactaaatatttgcttcaaaccgttcatacatggctttagaagttaaaaagatggcaatatcaagagaattatcaacaattatatg |
33127090 |
T |
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| Q |
131 |
gctagtctcgtggagtcttattatgatctatcatgttagtttagccgaaagagttttggaagacgaaaaaccagaaattgttgtcatgnnnnnnngaagt |
230 |
Q |
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| T |
33127089 |
gctagtctcgtggagtcttattatgatctatcacgttagtttagccgaaagagttttggaagacgaaaaaccagaaattgttgtcatgaaaaaaacaagt |
33126990 |
T |
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| Q |
231 |
ttcttctggtatagtggagagtcgtcctatgaacgtgtttggcctgtgagtttatcaagcacttatgttttttgttgtttattacgtcatttataatatt |
330 |
Q |
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| T |
33126989 |
ttcttctggtatagtggagagtcgtcctatgaacgtgtttggcctgtgagtttatcaaacacttatgttttttgttgtttattacgtcatttataatatt |
33126890 |
T |
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| Q |
331 |
gacatgatgttatgaaattggtgatgatgcatggtaatggttttgttgagcaggtaatgacgtttggttggagacttgtcgtagggtctattgtcgtatt |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| |
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| T |
33126889 |
gacatgatgttatgaaattggtgatgatgcatggtaatcgttttgttgagcaggaaatgaagtttggttggagaattgtcgtagggtctattgtcggatt |
33126790 |
T |
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| Q |
431 |
ttttggagcagccttgggaagtttaggtgtgatagtaggtgtatgaatttttattcctattctcactttgattattgtttttgatccaaagtcttctaca |
530 |
Q |
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|||||||||||| ||||||||| |||| | | ||| ||||| | |||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||| |
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| T |
33126789 |
ttttggagcagcattgggaagtgtaggaggggtaggaggtggaggaatttttatccctatgctcactttgatcattggttttgatccaaagtcttctaca |
33126690 |
T |
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