View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13282_low_9 (Length: 497)
Name: NF13282_low_9
Description: NF13282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13282_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 24376769 - 24376943
Alignment:
| Q |
13 |
aaaatcacatatttctctgtttttccctcttaaatcatcccaacaactagaattaactaattttcagttcaaaagtatcaaaattcacgtcaacattcaa |
112 |
Q |
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| T |
24376769 |
aaaatcacatatttctctgtttttccctcttaaatcatgccaacaactagaattaactaattttcagttcaaaagtatcaaaattcacgtcaacattcaa |
24376868 |
T |
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| Q |
113 |
atcataacttcaacaaacatcaaaattaaacaagttcatgagtataaaactgcacaaaacctacctcaaaccacg |
187 |
Q |
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| T |
24376869 |
atcataacttcaacaaacatcaaaattaaacaagttcatgagtataaaactgcacaaaacctacctcaaaccacg |
24376943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 324 - 479
Target Start/End: Original strand, 24377080 - 24377235
Alignment:
| Q |
324 |
ccctacctactataattgtactagcttttcagaacggttctcagagtgatggagtttgaactccaaaaccctagagagagaaacagtgacagttaggtta |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24377080 |
ccctacctactataattgtactagcttttcagaacggttctcagagtgatggagtttgaactccaaaaccctagagagagaaacagtgacagttaggtta |
24377179 |
T |
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| Q |
424 |
gagatagaagtgtaactataaggaagtgtttgtttttgaagtttgaaagagagaga |
479 |
Q |
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| T |
24377180 |
gagatagaagtgtaactataaggaagtgtttgtttttgaagtttgaaagagagaga |
24377235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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