View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13283_high_4 (Length: 247)

Name: NF13283_high_4
Description: NF13283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13283_high_4
NF13283_high_4
[»] chr1 (4 HSPs)
chr1 (15-206)||(18716167-18716358)
chr1 (15-77)||(32944463-32944525)
chr1 (15-118)||(3604807-3604911)
chr1 (18-89)||(9256040-9256111)
[»] chr4 (2 HSPs)
chr4 (11-147)||(51781951-51782088)
chr4 (46-194)||(29898942-29899091)
[»] chr7 (2 HSPs)
chr7 (23-156)||(23582531-23582665)
chr7 (114-156)||(23581662-23581704)
[»] chr6 (2 HSPs)
chr6 (16-106)||(12849901-12849991)
chr6 (15-52)||(21556331-21556368)
[»] chr8 (1 HSPs)
chr8 (15-56)||(36123165-36123206)
[»] chr5 (4 HSPs)
chr5 (15-156)||(15034488-15034629)
chr5 (38-90)||(32279524-32279577)
chr5 (34-77)||(13489847-13489891)
chr5 (19-90)||(33094467-33094539)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 18716358 - 18716167
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18716358 tagggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttga 18716259  T
Q  115 aatgctacaaaactttgttgatcctttctatgtatttctatattggtgtttacaaaaaatcgacttaaaatttgatttctaggtcaagattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18716258 aatgctacaaaactttgttgatcctttctatgtatttctatattggtgtttacaaaaaatcgacttaaaatttgatttctaggtcaaaattt 18716167  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 32944463 - 32944525
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgtt 77  Q
    ||||||| ||||||||| | |||| ||||||||||||| ||| ||||| ||||||||||||||    
T  32944463 tagggaacaaaatttgatcagtgagtatatgcttactcgaaaaaaattgcaattttgcatgtt 32944525  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 3604807 - 3604911
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactc-aaaataaatttcaattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttg 113  Q
    |||||||||||||||||||| ||| ||||| ||||||| |||  ||||  ||||||| |||||| | |||||||||| ||| |||||| ||  ||||| |    
T  3604807 tagggaataaaatttgacccttgagtatatacttactcgaaacaaaatagcaattttacatgttttggttgaaaaatcaaaataaattgagacgtagtag 3604906  T
Q  114 aaatg 118  Q
    |||||    
T  3604907 aaatg 3604911  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9256040 - 9256111
Alignment:
Q  18 ggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgttgttgttgaaaaa 89  Q
    ||||| |||||||||  ||||||||||||||||||  || |||||  ||||||||||||| | |||||||||    
T  9256040 ggaattaaatttgacttgtgaatatatgcttactccgaagaaattgtaattttgcatgttttggttgaaaaa 9256111  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 51782088 - 51781951
Alignment:
Q  11 aaaatagggaataaaatttgacccgtgaatatatgcttactcaaaataaattt-caattttgcatgttgttgttgaaaaattaaattaaattaaggtgta 109  Q
    ||||||||||| ||||||||| | |||| |||||| ||||||| |  ||| || |||||||| | | | | |||||||||||||| ||||| ||||  ||    
T  51782088 aaaatagggaacaaaatttgatcagtgagtatatgattactcagaccaaaattacaattttgaacgctttggttgaaaaattaaaataaatcaaggctta 51781989  T
Q  110 gttgaaatgctacaaaactttgttgatcctttctatgt 147  Q
    || | |||||||||||||||| | ||||||||| ||||    
T  51781988 gtcgcaatgctacaaaactttatagatcctttcaatgt 51781951  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 29899091 - 29898942
Alignment:
Q  46 cttactcaaaataaattt-caattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttgaaatgctacaaaactttgttgatcctttcta 144  Q
    |||||| |||||||| || |||||||||||||| | |||||||||| ||| |||||  |||  |||| | |||||||||| ||||  | |||| | ||||    
T  29899091 cttactaaaaataaaattacaattttgcatgttttggttgaaaaatcaaaataaatagaggcatagtcgcaatgctacaagacttgttagatcttctcta 29898992  T
Q  145 tgtatttctatattggtgtttacaaaaaatcgacttaaaatttgatttct 194  Q
    ||||||| ||||  ||||    ||||||||| ||| ||||||||||||||    
T  29898991 tgtatttttatagaggtggcgtcaaaaaatcaactaaaaatttgatttct 29898942  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 23582531 - 23582665
Alignment:
Q  23 aaaatttgacccgtgaatatatgcttactcaaaataaattt-caattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttgaaatgcta 121  Q
    |||||||||||||||| ||||  |||||||  || ||| || |||||| ||| ||| | |||||||||||||| |||||  |  |||  ||||| |||||    
T  23582531 aaaatttgacccgtgattatactcttactcggaacaaaattgcaatttagcaagttttagttgaaaaattaaaataaatagaaatgtctttgaattgcta 23582630  T
Q  122 caaaactttgttgatcctttctatgtatttctata 156  Q
    ||||||||||  |||||||| ||| ||||||||||    
T  23582631 caaaactttgcagatcctttatatctatttctata 23582665  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 23581662 - 23581704
Alignment:
Q  114 aaatgctacaaaactttgttgatcctttctatgtatttctata 156  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||    
T  23581662 aaatgttacaaaactttgctgatcctttttatgtatttctata 23581704  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 12849991 - 12849901
Alignment:
Q  16 agggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgttgttgttgaaaaattaaattaaattaaggt 106  Q
    |||||||||||||||| |||||||||||| |||||||  || ||||  |||||||||||| | |  ||||||||| ||| ||||| |||||    
T  12849991 agggaataaaatttgatccgtgaatatatacttactcggaacaaataacaattttgcatgctttgattgaaaaataaaaataaatcaaggt 12849901  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 21556368 - 21556331
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactc 52  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  21556368 tagggaacaaaatttgacccgttaatatatgcttactc 21556331  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 36123206 - 36123165
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactcaaaa 56  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  36123206 tagggaataaaatttgacgcgtaaatatatgcttactcaaaa 36123165  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 15034488 - 15034629
Alignment:
Q  15 tagggaataaaatttgacccgtgaatatatgcttactcaaaataaatttcaattttgcatgttgttgttgaaaaattaaattaaattaaggtgtagttga 114  Q
    |||| ||| ||||||||| ||||| | ||| |||||| | || ||||| | |||||| ||||| |  |||| |||||||| |||||| |||| ||||  |    
T  15034488 taggtaatgaaatttgactcgtgattctatacttacttagaaaaaattaccattttgtatgttttgattgacaaattaaaataaattgaggtatagtcaa 15034587  T
Q  115 aatgctacaaaactttgttgatcctttctatgtatttctata 156  Q
    |||||||| |||||| |  |||||| | ||||||||||||||    
T  15034588 aatgctacgaaacttagcagatcctctttatgtatttctata 15034629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 32279524 - 32279577
Alignment:
Q  38 aatatatgcttactcaaaata-aatttcaattttgcatgttgttgttgaaaaat 90  Q
    ||||||||||||||   |||| ||||||||||||||||||| ||||||||||||    
T  32279524 aatatatgcttacttggaatataatttcaattttgcatgtttttgttgaaaaat 32279577  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 13489847 - 13489891
Alignment:
Q  34 cgtgaatatatgcttactcaaaataaa-tttcaattttgcatgtt 77  Q
    ||||| |||||||||||| |||||||| |||||||||||||||||    
T  13489847 cgtgagtatatgcttacttaaaataaaatttcaattttgcatgtt 13489891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33094467 - 33094539
Alignment:
Q  19 gaataaaatttgacccgtgaatatatgcttactcaaaataaa-tttcaattttgcatgttgttgttgaaaaat 90  Q
    |||| ||| ||||||| | | ||||||||||||| ||||||| |||||||||| |||||| | ||||||||||    
T  33094467 gaatgaaacttgacccataagtatatgcttactcgaaataaaatttcaattttccatgttttagttgaaaaat 33094539  T

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