View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13284_high_10 (Length: 265)
Name: NF13284_high_10
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_high_10 |
 | |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 14174605 - 14174857
Alignment:
| Q |
1 |
acaaagtataatgtttttgaacagacttaagttcaaaattaatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
14174605 |
acaaagtataatgtttttgaacagacttaagttcaaaattaatcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattgg |
14174704 |
T |
|
| Q |
101 |
agagattgataatggtagcaagggcggtgatgccaacatcggaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaact |
200 |
Q |
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|
|||||| |||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14174705 |
agagatagataatggcatctagggcggtgatgccaacatcggaagaggaaatagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaact |
14174804 |
T |
|
| Q |
201 |
tcctttctcagatatctctatcaattcctccatatattatcaaacacaaaatt |
253 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
14174805 |
tcctttctcagatatgtctatcaattcgtccatatattatcaaacacaaaatt |
14174857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 951965 - 952217
Alignment:
| Q |
1 |
acaaagtataatgtttttgaacagacttaagttcaaaattaatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattgg |
100 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||||||| |
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| T |
951965 |
acaaagtataatgttttttattagatttaagttcaaaattaatcaaagttgaatcataattttcgctgctagatatatctgtcacggctggatgaattgg |
952064 |
T |
|
| Q |
101 |
agagattgataatggtagcaagggcggtgatgccaacatcggaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaact |
200 |
Q |
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|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
952065 |
agagattgataatggcagcaagggcggtggtgccaacatcggaagaggaagtagcaacaatcacaacatagaaaaagagtctctaattgcccttgtaatt |
952164 |
T |
|
| Q |
201 |
tcctttctcagatatctctatcaattcctccatatattatcaaacacaaaatt |
253 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
952165 |
tcctttatcagatatctctatcaattcctccatatattatcaaacacaaaatt |
952217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 9462240 - 9462178
Alignment:
| Q |
43 |
tcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagaga |
105 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||| ||| || | |||||||||||||||| |
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|
| T |
9462240 |
tcaaaattgaatcataattttcgctgccagatatacatgtcacggtcggatgaattggagaga |
9462178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 10714542 - 10714753
Alignment:
| Q |
42 |
atcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcg |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
10714542 |
atcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattggagagattgataatggcagcaagggtggtgatgccaacatcg |
10714641 |
T |
|
| Q |
142 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatc |
241 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10714642 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatc |
10714741 |
T |
|
| Q |
242 |
aaacacaaaatt |
253 |
Q |
| |
|
||| ||||||| |
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|
| T |
10714742 |
aaaaccaaaatt |
10714753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 10928312 - 10928523
Alignment:
| Q |
42 |
atcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcg |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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|
| T |
10928312 |
atcaaagttgaatcataattttcgctgctagatatacctgtcacggctggatgaattggagagattgataatggcagcaagggtggtgatgccaacatcg |
10928411 |
T |
|
| Q |
142 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10928412 |
gaagaggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatc |
10928511 |
T |
|
| Q |
242 |
aaacacaaaatt |
253 |
Q |
| |
|
||| ||||||| |
|
|
| T |
10928512 |
aaaaccaaaatt |
10928523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 8922131 - 8921998
Alignment:
| Q |
119 |
caagggcggtgatgccaacatcggaagaggaagtagca--acaatcacaacaaagaaaaagagtctctaattgccct-tgtaacttcctttctcagatat |
215 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||| |||| |||||| |||||||| ||| |||||| ||||| ||||||||||| |||||||||| |
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| T |
8922131 |
caagggcggcgatgcgaacatcggaagagaaagtagcagcacaaacacaacgaagaaaaacagtgtctaatcgccctctgtaacttcctatctcagatat |
8922032 |
T |
|
| Q |
216 |
ctctatcaattcctccatatattatcaaacacaa |
249 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |
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|
| T |
8922031 |
ctctatccattcctccacatattatcaaacacaa |
8921998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 40723472 - 40723266
Alignment:
| Q |
47 |
agttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcggaaga |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
40723472 |
agttgaatcataattttcgcggctagatatacctgtcacggccggataaattggagagattgataatggcaacaagggcggtgatgccaacatcggaaga |
40723373 |
T |
|
| Q |
147 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatcaaaca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40723372 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatcaaaca |
40723273 |
T |
|
| Q |
247 |
caaaatt |
253 |
Q |
| |
|
||||||| |
|
|
| T |
40723272 |
caaaatt |
40723266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 33288196 - 33288260
Alignment:
| Q |
41 |
aatcaaagttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagaga |
105 |
Q |
| |
|
||||||| ||||||||||||||| || | | ||||||||||| || | |||||||||||||||| |
|
|
| T |
33288196 |
aatcaaaattgaatcataattttggctggtggatatacctgtcacggtcggatgaattggagaga |
33288260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 258427 - 258221
Alignment:
| Q |
47 |
agttgaatcataattttcgcggctagatatacctgtgacagctggatgaattggagagattgataatggtagcaagggcggtgatgccaacatcggaaga |
146 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
258427 |
agttgaatcataattttcgctgctagatatacctgtcatggctggatgaattggagagattgataatggcagcaaaggcggtgatgccaacatcggaaga |
258328 |
T |
|
| Q |
147 |
ggaagtagcaacaatcacaacaaagaaaaagagtctctaattgcccttgtaacttcctttctcagatatctctatcaattcctccatatattatcaaaca |
246 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258327 |
ggaagtagcaacagtcacaacaaagaaaaagagtctctaatttcccttgtaacttcctttctcagatatctctatcaattcctccatatattatcaaaca |
258228 |
T |
|
| Q |
247 |
caaaatt |
253 |
Q |
| |
|
||||||| |
|
|
| T |
258227 |
caaaatt |
258221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 258459 - 258428
Alignment:
| Q |
1 |
acaaagtataatgtttttgaacagacttaagt |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
258459 |
acaaagtataatgtttttgaacagacttaagt |
258428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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