View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13284_high_12 (Length: 248)
Name: NF13284_high_12
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_high_12 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 232445 - 232217
Alignment:
| Q |
4 |
tacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatcacctgaccatgaactttgtacctaact |
103 |
Q |
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| T |
232445 |
tacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatcacctgaacatggactttgtacctaact |
232346 |
T |
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| Q |
104 |
attgttaactgacaattaagaaccacatcaattaacagatatattgcacgtcaggaaaaaatatccgaagaagcaattaagaaaatttaaaaatcattag |
203 |
Q |
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| T |
232345 |
attgttgactgacaattaagaaccacatcaattaacagatatattgcacgttaggaaaaaatatccaaagaagcaattaagaaaatttaaaaatcattag |
232246 |
T |
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| Q |
204 |
ttagatggccttggcacaacattccttcc |
232 |
Q |
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|||| || ||| ||||||||||||||||| |
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| T |
232245 |
ttagctgacctgggcacaacattccttcc |
232217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 14584930 - 14585158
Alignment:
| Q |
4 |
tacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatcacctgaccatgaactttgtacctaact |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
14584930 |
tacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatcacctgaacatggactttgtacctaact |
14585029 |
T |
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| Q |
104 |
attgttaactgacaattaagaaccacatcaattaacagatatattgcacgtcaggaaaaaatatccgaagaagcaattaagaaaatttaaaaatcattag |
203 |
Q |
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| T |
14585030 |
attgttgactgacaattaagaaccacatcaattaacagatatattgcacgttaggaaaaaatatccaaagaagcaattaagaaaatttaaaaatcattag |
14585129 |
T |
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| Q |
204 |
ttagatggccttggcacaacattccttcc |
232 |
Q |
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| T |
14585130 |
ttagctgacctgggcacaacattccttcc |
14585158 |
T |
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Back To:
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