View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13284_high_14 (Length: 210)

Name: NF13284_high_14
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13284_high_14
NF13284_high_14
[»] chr3 (3 HSPs)
chr3 (9-210)||(8342774-8342975)
chr3 (16-98)||(8342739-8342821)
chr3 (126-174)||(26728475-26728523)
[»] scaffold0061 (2 HSPs)
scaffold0061 (16-134)||(29045-29163)
scaffold0061 (127-206)||(29009-29088)
[»] scaffold0017 (4 HSPs)
scaffold0017 (16-134)||(169629-169747)
scaffold0017 (127-206)||(169704-169783)
scaffold0017 (16-131)||(174538-174653)
scaffold0017 (127-188)||(174628-174689)
[»] chr1 (5 HSPs)
chr1 (55-132)||(44612824-44612901)
chr1 (127-206)||(11544229-11544308)
chr1 (127-175)||(44612928-44612976)
chr1 (55-103)||(11544304-11544352)
chr1 (60-128)||(35899414-35899482)
[»] chr5 (1 HSPs)
chr5 (19-100)||(29507359-29507440)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 8342975 - 8342774
Alignment:
Q  9 gacatcatcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcattaaga 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8342975 gacaccatcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccaattagtttattgtcataaaga 8342876  T
Q  109 tacaacactctcaaggatgagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaagcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8342875 tacaacactctcaaggatgagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaagcg 8342776  T
Q  209 ac 210  Q
    ||    
T  8342775 ac 8342774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 8342821 - 8342739
Alignment:
Q  16 tcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttatt 98  Q
    ||||||||||||||||  ||| |||||  ||| ||||  ||||| || |||||||||||||||||||||||| ||| ||||||    
T  8342821 tcaaaagagtttctgcgcaggctcaaaacctctaactctgtaagcgacccgatgctcgtgggtatttctccaattaatttatt 8342739  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 26728523 - 26728475
Alignment:
Q  126 tgagaggttagtgaaatgggattcagagagggtgccttcaaaagagttt 174  Q
    ||||||||||||||||||||||||||||| |   |||||||||||||||    
T  26728523 tgagaggttagtgaaatgggattcagagacgacaccttcaaaagagttt 26728475  T

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Target: scaffold0061 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 29045 - 29163
Alignment:
Q  16 tcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcattaagatacaaca 115  Q
    ||||||||||||| ||| |||  |||| |||  ||||  ||||||||||||||||||||||||||||||||| ||| |||||||||   ||||  |||||    
T  29045 tcaaaagagtttcggctcaggtacaaactctttaactctgtaagtgatccgatgctcgtgggtatttctccaattaatttattgtccacaagactcaaca 29144  T
Q  116 ctctcaaggatgagaggtt 134  Q
     |||||| |||||||||||    
T  29145 gtctcaaagatgagaggtt 29163  T

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Target: scaffold0061; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 29009 - 29088
Alignment:
Q  127 gagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaag 206  Q
    |||||||||||||||||||||||||||| |   |||||||||||||||| || ||||  ||||  || ||||||||||||    
T  29009 gagaggttagtgaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaag 29088  T

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Target: scaffold0017 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 169747 - 169629
Alignment:
Q  16 tcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcattaagatacaaca 115  Q
    ||||||||||||| ||| |||  |||| |||  ||||  ||||||||||||||||||||||||||||||||| ||| |||||||||   ||||  |||||    
T  169747 tcaaaagagtttcggctcaggtacaaactctttaactctgtaagtgatccgatgctcgtgggtatttctccaattaatttattgtccacaagactcaaca 169648  T
Q  116 ctctcaaggatgagaggtt 134  Q
     |||||| |||||||||||    
T  169647 gtctcaaagatgagaggtt 169629  T

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Target: scaffold0017; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 169783 - 169704
Alignment:
Q  127 gagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaag 206  Q
    |||||||||||||||||||||||||||| |   |||||||||||||||| || ||||  ||||  || ||||||||||||    
T  169783 gagaggttagtgaaatgggattcagagacgacaccttcaaaagagtttcggctcaggtacaaactctttaactctgtaag 169704  T

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Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 174653 - 174538
Alignment:
Q  16 tcaaaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcattaagatacaaca 115  Q
    ||||||||||||||||| ||  ||||  |||  |||| | | || ||||||||||| ||| ||||||||||| ||| |||||| |||  ||||||||||     
T  174653 tcaaaagagtttctgctcagactcaatgtctgtaactccatgagcgatccgatgctagtgtgtatttctccaattaatttattatcagcaagatacaact 174554  T
Q  116 ctctcaaggatgagag 131  Q
     |||||| ||||||||    
T  174553 gtctcaaagatgagag 174538  T

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Target: scaffold0017; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 174689 - 174628
Alignment:
Q  127 gagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaa 188  Q
    ||||||||||||||||| ||||||||||     ||||||||||||||||||| ||| |||||    
T  174689 gagaggttagtgaaatgcgattcagagacaacaccttcaaaagagtttctgctcagactcaa 174628  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 44612901 - 44612824
Alignment:
Q  55 gtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcattaagatacaacactctcaaggatgagagg 132  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||  ||||| |||||| || ||||||    
T  44612901 gtaagtgatccgatgctcgcgggtatttctccagttaatttattgacattaagaaccaacagtctcaaagacgagagg 44612824  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 11544229 - 11544308
Alignment:
Q  127 gagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttctgcgcaggctcaaaacctctaactctgtaag 206  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||| || |||  ||||||  |||||||| |||||    
T  11544229 gagaggttagtgaaatgggattcagagacaatgccttcaaaagagtttccgcccagattcaaaatttctaactcggtaag 11544308  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 44612976 - 44612928
Alignment:
Q  127 gagaggttagtgaaatgggattcagagagggtgccttcaaaagagtttc 175  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||    
T  44612976 gagaggttagtgaaatgggattcagagatgataccttcaaaagagtttc 44612928  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 11544304 - 11544352
Alignment:
Q  55 gtaagtgatccgatgctcgtgggtatttctccatttagtttattgtcat 103  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||||||    
T  11544304 gtaagtgatccaatgctcgtgggtatttctccaattaaattattgtcat 11544352  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 35899482 - 35899414
Alignment:
Q  60 tgatccgatgctcgtgggtatttctccatttagtttattgtcattaagatacaacactctcaaggatga 128  Q
    |||||| |||||||||||||||||||||  || ||||||  ||  ||||||||||| |||||| |||||    
T  35899482 tgatccaatgctcgtgggtatttctccaaataatttatttccagcaagatacaacattctcaaagatga 35899414  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 29507359 - 29507440
Alignment:
Q  19 aaagagtttctgcttaggatcaaattctccaacttcgtaagtgatccgatgctcgtgggtatttctccatttagtttattgt 100  Q
    |||||||| |||| ||||  ||||| ||| |||||||||||  ||  ||||| |||||||||||||||| ||||||||||||    
T  29507359 aaagagttgctgcctaggtacaaatactctaacttcgtaagcaatgtgatgcccgtgggtatttctccagttagtttattgt 29507440  T

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