View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13284_high_2 (Length: 809)
Name: NF13284_high_2
Description: NF13284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13284_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 18 - 624
Target Start/End: Complemental strand, 43438125 - 43437519
Alignment:
| Q |
18 |
ctaatcacaacaaaacaatcttagttggcaagcacaagggtgctttaaagtccaattttaagccatgcatagtttgaaacatcttttagcaaggcaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43438125 |
ctaatcacaacaaaacaatcttagttggcaagcacaagggtgctttaaagtccaattttaagccatgcatagtttgaaacatcttttagcaaggcaacta |
43438026 |
T |
|
| Q |
118 |
atcagagtagtcaatagcacgctatagcggcttagcgtagcggccacccaccgctacagtcggtggcttagcggagcgtacaaagatagcagccgctttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43438025 |
atcagagtagtcaatagcacgctatagcggcttagcgtagcggccacccaccgctacggtcggtggcttagcggagcgtactaagatagcagccgctttg |
43437926 |
T |
|
| Q |
218 |
gctgctgtagcaggtagtggaagcgtagcaggttgcggagcttgtagcagcttcagatctgctatttgattttagtaggaaaactccaaattaaccctaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437925 |
gctgctgtagcaggtagtggaagcgtagcaggttgcggagcttgtagcagtttcagatctgctatttgattttagtaggaaaactccaaattaaccctaa |
43437826 |
T |
|
| Q |
318 |
ttttaaacccattttggggatttcttataaaccctaaattttcccaactctttctcttctcacacgatcctcttttgcgctgcataacacacaaacacag |
417 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43437825 |
ttttaaacccattttggggatttcttataaatcctaaattttcccaactctttctcttctcacacgatcctctgttgcgctgcataacacacaaacacag |
43437726 |
T |
|
| Q |
418 |
tcacacgagctcttcgtctcttcctcggttgccgtcgcagatcctatcttcatctcttcactttcaaatcttcctaagcactttcagtttcagatccttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437725 |
tcacacgagctcttcgtctcttcctcggttgccgtcgcagatcctatcttcatctcttcactttcaaatcttcctaagcactttcagtttcagatccttt |
43437626 |
T |
|
| Q |
518 |
acatcgttatgtttcttcctttgtaaactatgttacaggttatttttattttcttcctcggttctcaacttctaaattgcagaattttgtatctgaattt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437625 |
acatcgttatgtttcttcctttgtaaactatgttacaggttatttttattttcttcctcggttctcaacttctaaattgcagaattttgtatctgaattt |
43437526 |
T |
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| Q |
618 |
cacaaaa |
624 |
Q |
| |
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||||||| |
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| T |
43437525 |
cacaaaa |
43437519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 656 - 796
Target Start/End: Complemental strand, 43437486 - 43437342
Alignment:
| Q |
656 |
cctctggtaactggttccatc----ccatttgttctcttcctaagcactttcaaatccttatgcagaattttgtaaactatgtttccactcaattcctaa |
751 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437486 |
cctctggtaactggttccatctgttccatttgttctcttcctaagcactttcaaatccttatgcagaattttgtaaactatgtttccactcaattcctaa |
43437387 |
T |
|
| Q |
752 |
attgccatgtattttcgtaaactattgtatgcttctacctatgct |
796 |
Q |
| |
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| T |
43437386 |
attgccatgtattttcgtaaactattgtatgcttctacctatgct |
43437342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 200 - 384
Target Start/End: Original strand, 3277272 - 3277472
Alignment:
| Q |
200 |
aagatagcagccgctttggctgctgtagcaggtagtggaagcgta----gcaggttgcggagcttgtagcagcttcagatctgc-tatttgattttagta |
294 |
Q |
| |
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|||||||| ||| ||| ||||||| ||| ||||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
3277272 |
aagatagcggccacttaggctgctacagcgggtagtggaagcgtacgtagcgggttgcggagcttgtaggggcttcagatccgcctatttgattttagta |
3277371 |
T |
|
| Q |
295 |
ggaaaactccaaattaaccctaattttaaacccatttt-----------ggggatttcttataaaccctaaattttcccaactctttctcttctcacacg |
383 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
3277372 |
ggaaaactccaaattaactctaattttaaacccattttgagggcattcaggagatttggtataaaccctaaatttccccaactctttctcttctcacacg |
3277471 |
T |
|
| Q |
384 |
a |
384 |
Q |
| |
|
| |
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|
| T |
3277472 |
a |
3277472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 656 - 789
Target Start/End: Original strand, 3278050 - 3278185
Alignment:
| Q |
656 |
cctctggtaactggttccatc----ccatttgttctcttcctaagcactttcaaatccttatgcagaattttgtaaactatgtttccactcaattcctaa |
751 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
3278050 |
cctctggtaactggttccatctattccatttgctctcttcctaagcattttcaaatgcttatgcagaacttcgtaaactatgtttccactcaatttctaa |
3278149 |
T |
|
| Q |
752 |
attgccatgtattttcgtaaactattgtatgcttctac |
789 |
Q |
| |
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||||| | ||||| |||||||||||||||||||||| |
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| T |
3278150 |
attgc--taaatttttgtaaactattgtatgcttctac |
3278185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 505 - 618
Target Start/End: Original strand, 3277898 - 3278011
Alignment:
| Q |
505 |
tttcagatcctttacatcgttatgtttcttcctttgtaaactatgttacaggttatttttattttcttcctcggttctcaacttctaaattgcagaattt |
604 |
Q |
| |
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||||||||||||||||| ||| ||||||||||| ||||| |||| |||| ||||||||||||||| || | |||||||| ||||||||||||| | || |
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| T |
3277898 |
tttcagatcctttacattgttgtgtttcttcctatgtaaggtatgctacaagttatttttattttcatcatgagttctcaatttctaaattgcaggactt |
3277997 |
T |
|
| Q |
605 |
tgtatctgaatttc |
618 |
Q |
| |
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|||||||||||||| |
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| T |
3277998 |
tgtatctgaatttc |
3278011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 789
Target Start/End: Complemental strand, 34850823 - 34850753
Alignment:
| Q |
719 |
attttgtaaactatgtttccactcaattcctaaattgccatgtattttcgtaaactattgtatgcttctac |
789 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||| || ||||||| ||||| || |||||||||||| |
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| T |
34850823 |
attttgtaaactatgtttccactcaatttccaaattggcaagtatttttgtaaaatacagtatgcttctac |
34850753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 22696806 - 22696760
Alignment:
| Q |
278 |
gctatttgattttagtaggaaaactccaaattaaccctaattttaaa |
324 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||| ||||||| |
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| T |
22696806 |
gctatttgattttagtaggaaatttccaaatttaccctatttttaaa |
22696760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 19635607 - 19635653
Alignment:
| Q |
278 |
gctatttgattttagtaggaaaactccaaattaaccctaattttaaa |
324 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||| ||||||| |
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|
| T |
19635607 |
gctatttgattttagtaggaaatttccaaattgaccctatttttaaa |
19635653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 460
Target Start/End: Complemental strand, 44734723 - 44734681
Alignment:
| Q |
418 |
tcacacgagctcttcgtctcttcctcggttgccgtcgcagatc |
460 |
Q |
| |
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||||||||||||||| |||||||||| |||| ||||||||||| |
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| T |
44734723 |
tcacacgagctcttcatctcttcctctgttgtcgtcgcagatc |
44734681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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